RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 TNFRSF1BP20333 461 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 DLSTP36957 453 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 RNF4P78317 190 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 KCNC4Q03721 635 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 DNASE1L3Q13609 305 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 LRRC36Q1X8D7 754 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 FLYWCH1Q4VC44 716 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 PACS2Q86VP3 889 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 ICA1LQ8NDH6 482 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 VPS50Q96JG6 964 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 C7orf34Q96L11 122 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 FAM117AQ9C073 453 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 ZNF700Q9H0M5 742 aa20.59■□□□□ 0.89
ATG4D-209ENST00000588857 IGHV1-45A0A0A0MS14 117 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 PRKNO60260 465 aaPredicted RBP20.58■□□□□ 0.88
ATG4D-209ENST00000588857 IGKV1D-16P01601 117 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 IFNW1P05000 195 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 PEX2P28328 305 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 PRKAR1BP31321 381 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 RPS18P62269 152 aaKnown RBP20.58■□□□□ 0.88
ATG4D-209ENST00000588857 CAMK2BQ13554 666 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 PCOLCEQ15113 449 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 AP1ARQ63HQ0 302 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 VRK2Q86Y07 508 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 KDF1Q8NAX2 398 aaPredicted RBP20.58■□□□□ 0.88
ATG4D-209ENST00000588857 C17orf47Q8NEP4 570 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 EME1Q96AY2 570 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 THSD1Q9NS62 852 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 ABCG2Q9UNQ0 655 aa20.58■□□□□ 0.88
ATG4D-209ENST00000588857 WDFY3Q8IZQ1 3526 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 FRYQ5TBA9 3013 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 TRBV11-1A0A0K0K1C0 115 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 TMEM8BA6NDV4 472 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 ACOX3O15254 700 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 THBS1P07996 1170 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 NR0B1P51843 470 aaKnown RBP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 PSMD4P55036 377 aaKnown RBP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 PSPHP78330 225 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 SSPNQ14714 243 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 CPEB4Q17RY0 729 aaKnown RBP eCLIP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 GRAMD1BQ3KR37 738 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 OGFRL1Q5TC84 451 aaPredicted RBP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 DHRS4L2Q6PKH6 230 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 ZSCAN1Q8NBB4 408 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 CATSPER1Q8NEC5 780 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 RSPO3Q9BXY4 272 aaPredicted RBP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 NRSN2Q9GZP1 204 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 KLHL28Q9NXS3 571 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 ZNF443Q9Y2A4 671 aaPredicted RBP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 SLC9A8Q9Y2E8 581 aa20.57■□□□□ 0.88
ATG4D-209ENST00000588857 FAM32AQ9Y421 112 aaKnown RBP20.57■□□□□ 0.88
ATG4D-209ENST00000588857 OTX2P32243 289 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 EXT1Q16394 746 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 OR2T5Q6IEZ7 315 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 KIRREL2Q6UWL6 708 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 ZAR1Q86SH2 424 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 CARM1Q86X55 608 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 OR5L2Q8NGL0 311 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 OR2T29Q8NH02 315 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 OR8K3Q8NH51 312 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 TP53INP1Q96A56 240 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 HSPBAP1Q96EW2 488 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 ZNF347Q96SE7 839 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 TACO1Q9BSH4 297 aaKnown RBP20.56■□□□□ 0.88
ATG4D-209ENST00000588857 KLHL4Q9C0H6 718 aa20.56■□□□□ 0.88
ATG4D-209ENST00000588857 ZNF223Q9UK11 482 aaPredicted RBP20.56■□□□□ 0.88
ATG4D-209ENST00000588857 NPIPA5A0A0B4J1W7 369 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 CDC14CA4D256 554 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 CDRT15L2A8MXV6 281 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 NPIPA7E9PJI5 369 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 SYT5O00445 386 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 PEX12O00623 359 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 TO15178 435 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 ZFAND5O76080 213 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 IL33O95760 270 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 LGI1O95970 557 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 NPIPA8P0DM63 369 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 COX6A1P12074 109 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 RPS4Y1P22090 263 aaKnown RBP20.55■□□□□ 0.88
ATG4D-209ENST00000588857 KRT20P35900 424 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 BTBD16Q32M84 506 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 LIN52Q52LA3 116 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 EIPR1Q53HC9 387 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 NDUFAF7Q7L592 441 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 ZNF441Q8N8Z8 693 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 OR11G2Q8NGC1 345 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 VANGL1Q8TAA9 524 aaPredicted RBP20.55■□□□□ 0.88
ATG4D-209ENST00000588857 NUBPLQ8TB37 319 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 APOBEC4Q8WW27 367 aaKnown RBP20.55■□□□□ 0.88
ATG4D-209ENST00000588857 TMBIM1Q969X1 311 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 ARMC7Q9H6L4 198 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 NDUFAF4Q9P032 175 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 KCND3Q9UK17 655 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 AKAP13Q12802 2813 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 EPG5Q9HCE0 2579 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 TRABD2BA6NFA1 517 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 PRAMEF25A6NGN4 478 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 SAC3D1A6NKF1 404 aa20.55■□□□□ 0.88
ATG4D-209ENST00000588857 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.55■□□□□ 0.88
ATG4D-209ENST00000588857 SOCS6O14544 535 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms