RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 FADS1O60427 444 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 ZWINTO95229 277 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 UTS2O95399 124 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 IGFBP2P18065 325 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 BMP5P22003 454 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 CHMP24386 653 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 CEACAM8P31997 349 aaPredicted RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 PRIM2P49643 509 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 GAS1P54826 345 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 ABCE1P61221 599 aaKnown RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 STX5Q13190 355 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 MYBPHQ13203 477 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 GANABQ14697 944 aaKnown RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 MLC1Q15049 377 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 LSM12Q3MHD2 195 aaKnown RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 DCST1Q5T197 706 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 CES4AQ5XG92 561 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 ZCCHC12Q6PEW1 402 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 CHMP1BQ7LBR1 199 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 LIX1LQ8IVB5 337 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 OR6Y1Q8NGX8 325 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 OR5P2Q8WZ92 322 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 CHMP6Q96FZ7 201 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 RMND5BQ96G75 393 aaPredicted RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 C3orf30Q96M34 536 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 ZIM3Q96PE6 472 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 ZNF559Q9BR84 538 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 C1orf50Q9BV19 199 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 NTMQ9P121 344 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 GIMAP2Q9UG22 337 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 KCNN3Q9UGI6 736 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 RPH3AQ9Y2J0 694 aaPredicted RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.25□□□□□ -0.61
SS18-225ENST00000585121 SNX8Q9Y5X2 465 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 ACTL7BQ9Y614 415 aa11.25□□□□□ -0.61
SS18-225ENST00000585121 CSMD1Q96PZ7 3565 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 INTS1Q8N201 2190 aaKnown RBP11.24□□□□□ -0.61
SS18-225ENST00000585121 GXYLT2A0PJZ3 443 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 NKX2-2O95096 273 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 ALOX5P09917 674 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 HPGDP15428 266 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 HK1P19367 917 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 PRPS1L1P21108 318 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 CTSSP25774 331 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 OPRM1P35372 400 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 ASCL1P50553 236 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 DGKQP52824 942 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 GFRA1P56159 465 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 C17orf67Q0P5P2 114 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 SMU1Q2TAY7 513 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 SPDYE7PQ495Y7 208 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 HHATQ5VTY9 493 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 SEM1Q6ZVN7 128 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 COX18Q8N8Q8 333 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 FADS6Q8N9I5 356 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 OR2M3Q8NG83 312 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 OR7A2PQ8NGA2 310 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 DUSP19Q8WTR2 217 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 PIK3R3Q92569 461 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 JADE3Q92613 823 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 TM9SF2Q99805 663 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 PAIP2Q9BPZ3 127 aaKnown RBP11.24□□□□□ -0.61
SS18-225ENST00000585121 MCCC2Q9HCC0 563 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 MED4Q9NPJ6 270 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 ZCCHC3Q9NUD5 404 aaKnown RBP11.24□□□□□ -0.61
SS18-225ENST00000585121 MED11Q9P086 117 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 FOXD3Q9UJU5 478 aaPredicted RBP11.24□□□□□ -0.61
SS18-225ENST00000585121 RAP2CQ9Y3L5 183 aa11.24□□□□□ -0.61
SS18-225ENST00000585121 MBD3L4A6NDZ8 208 aaPredicted RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 MBD3L3A6NE82 208 aaPredicted RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 MBD3L5A6NJ08 208 aaPredicted RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 LINC01387J3KSC0 135 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 ZIC3O60481 467 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 SOX30O94993 753 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 KRT16P08779 473 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 LAMP1P11279 417 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 PEPDP12955 493 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 EFNA1P20827 205 aaPredicted RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 TCEA1P23193 301 aaKnown RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 LCN1P31025 176 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 UQCRC1P31930 480 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 ARRB2P32121 409 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 SLC1A6P48664 564 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 WNT3P56703 355 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 EEFSECP57772 596 aaKnown RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 EMX2Q04743 252 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 STX3Q13277 289 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 PTGR1Q14914 329 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 PDCD2Q16342 344 aaPredicted RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 BCL2A1Q16548 175 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 HSP90B2PQ58FF3 399 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 RAET1LQ5VY80 246 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 MFSD12Q6NUT3 480 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 ARSKQ6UWY0 536 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 MARCH3Q86UD3 253 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 LURAP1LQ8IV03 231 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 MEIOBQ8N635 442 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 OR56A1Q8NGH5 318 aa11.23□□□□□ -0.61
SS18-225ENST00000585121 GOT1L1Q8NHS2 421 aaPredicted RBP11.23□□□□□ -0.61
SS18-225ENST00000585121 MBD3L2Q8NHZ7 208 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms