RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 IL33O95760 270 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 ZNF708P17019 499 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 GABRA3P34903 492 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 GPC1P35052 558 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 DSCR4P56555 118 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 CLDN18P56856 261 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 B3GALT5-AS1P59052 145 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 ZNHIT3Q15649 155 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 GALNTL6Q49A17 601 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 ARL13AQ5H913 290 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 MARCH3Q86UD3 253 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 GCNT2Q8N0V5 402 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 FADS6Q8N9I5 356 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 PIK3R3Q92569 461 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 INTS12Q96CB8 462 aaKnown RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 PPCDCQ96CD2 204 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 MBD6Q96DN6 1003 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 FCRL1Q96LA6 429 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 ALPK1Q96QP1 1244 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 CCT7Q99832 543 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 TRMOQ9BU70 441 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 RBM24Q9BX46 236 aaKnown RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 REEP4Q9H6H4 257 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 MKS1Q9NXB0 559 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 SH3BP4Q9P0V3 963 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 CLCF1Q9UBD9 225 aa18.52■□□□□ 0.56
SHMT1-209ENST00000582653 MPDZO75970 2070 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 VPS13CQ709C8 3753 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 LSM1O15116 133 aaKnown RBP18.51■□□□□ 0.55
SHMT1-209ENST00000582653 IGKV1D-16P01601 117 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 PRKAG1P54619 331 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 UGT3A2Q3SY77 523 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 FBXW10Q5XX13 1052 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 ZCCHC23Q6ZST2 131 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 EXOC3L1Q86VI1 746 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 DDIASQ8IXT1 998 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 UBQLNLQ8IYU4 475 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 OR5M1Q8NGP8 315 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 AGR3Q8TD06 166 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 DUSP19Q8WTR2 217 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 DACH2Q96NX9 599 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 PIGMQ9H3S5 423 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 GIMAP2Q9UG22 337 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 TRAF6Q9Y4K3 522 aa18.51■□□□□ 0.55
SHMT1-209ENST00000582653 DOCK7Q96N67 2140 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 ANKHD1Q8IWZ3 2542 aaKnown RBP18.5■□□□□ 0.55
SHMT1-209ENST00000582653 A8MXE2 369 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 PIP5K1BO14986 540 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 TGM6O95932 706 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 CHEK2O96017 543 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 FGF4P08620 206 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 NUDT17P0C025 328 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 PRPS2P11908 318 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 NEFHP12036 1026 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 CREB1P16220 341 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 HK1P19367 917 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 KLK2P20151 261 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 EFNA1P20827 205 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-209ENST00000582653 IFFO1Q0D2I5 559 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 APOOLQ6UXV4 268 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 RNF165Q6ZSG1 346 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 GALNT10Q86SR1 603 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 LUZP2Q86TE4 346 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 TCP10LQ8TDR4 215 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 GPR151Q8TDV0 419 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 TWIST2Q8WVJ9 160 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 PLEKHF2Q9H8W4 249 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 SDHAF3Q9NRP4 125 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 FAM120CQ9NX05 1096 aaKnown RBP18.5■□□□□ 0.55
SHMT1-209ENST00000582653 ABCG2Q9UNQ0 655 aa18.5■□□□□ 0.55
SHMT1-209ENST00000582653 H0YC42 278 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 GMFGO60234 142 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 NPHS1O60500 1241 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 UTS2O95399 124 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 PEPDP12955 493 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 MANFP55145 182 aaKnown RBP18.49■□□□□ 0.55
SHMT1-209ENST00000582653 TPD52P55327 224 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-209ENST00000582653 PPP2R2AP63151 447 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 RAET1LQ5VY80 246 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 PAMR1Q6UXH9 720 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 SZRD1Q7Z422 152 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 GRAMD2AQ8IUY3 354 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 RIBC1Q8N443 379 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-209ENST00000582653 FBXO30Q8TB52 745 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 GALNT8Q9NY28 637 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 LGALS13Q9UHV8 139 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 MRTO4Q9UKD2 239 aaKnown RBP18.49■□□□□ 0.55
SHMT1-209ENST00000582653 ZNF337Q9Y3M9 751 aa18.49■□□□□ 0.55
SHMT1-209ENST00000582653 MAP1AP78559 2803 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-209ENST00000582653 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 HCRTR2O43614 444 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 TBX19O60806 448 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 KCNH1O95259 989 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 RAF1P04049 648 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 CRHP06850 196 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 IFI6P09912 130 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 BCKDHAP12694 445 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 ARRB2P32121 409 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 MAP3K8P41279 467 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 FRKP42685 505 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms