RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZDHHC6Q9H6R6 413 aa4□□□□□ -1.77
NUP88-213ENST00000576862 PLEK2Q9NYT0 353 aa4□□□□□ -1.77
NUP88-213ENST00000576862 PSME2Q9UL46 239 aa4□□□□□ -1.77
NUP88-213ENST00000576862 FBXO7Q9Y3I1 522 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CPQQ9Y646 472 aa4□□□□□ -1.77
NUP88-213ENST00000576862 TTC41PQ6P2S7 1318 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 CDHR2Q9BYE9 1310 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 A0A1W2PRV1 198 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 NEDD8-MDP1E9PL57 170 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 CXCL11O14625 94 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 CHUKO15111 745 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 SPAG6O75602 509 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 NPPAP01160 153 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 UBTFL6P0CB48 400 aaPredicted RBP3.99□□□□□ -1.77
NUP88-213ENST00000576862 S100A5P33763 92 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 SPRP35270 261 aaPredicted RBP3.99□□□□□ -1.77
NUP88-213ENST00000576862 CAMLGP49069 296 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 RPL27P61353 136 aaKnown RBP3.99□□□□□ -1.77
NUP88-213ENST00000576862 NPRL3Q12980 569 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 LCP2Q13094 533 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 SLC17A1Q14916 467 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 ZNF789Q5FWF6 425 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 SNRNP48Q6IEG0 339 aaKnown RBP3.99□□□□□ -1.77
NUP88-213ENST00000576862 RFWD3Q6PCD5 774 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 MIER3Q7Z3K6 550 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 HIPK1Q86Z02 1210 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 WDR49Q8IV35 697 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 ZNF584Q8IVC4 421 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 LAX1Q8IWV1 398 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 KRT222Q8N1A0 295 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 FAM184AQ8NB25 1140 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 CCDC197Q8NCU1 140 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 AGAP11Q8TF27 550 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 SLC13A3Q8WWT9 602 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 RAPGEF5Q92565 580 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 GGHQ92820 318 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 RAB7BQ96AH8 199 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 AP2M1Q96CW1 435 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 PCED1BQ96HM7 432 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 RAB40CQ96S21 281 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 NUSAP1Q9BXS6 441 aaKnown RBP3.99□□□□□ -1.77
NUP88-213ENST00000576862 NACA2Q9H009 215 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 C8orf33Q9H7E9 229 aaPredicted RBP3.99□□□□□ -1.77
NUP88-213ENST00000576862 NT5DC2Q9H857 520 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 SP140LQ9H930 580 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 ABCB8Q9NUT2 735 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 ZNF446Q9NWS9 450 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 CNIH4Q9P003 139 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 MGAT4AQ9UM21 535 aa3.99□□□□□ -1.77
NUP88-213ENST00000576862 WDR19Q8NEZ3 1342 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 XKRY2A2RUG3 117 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 TRIM49BA6NDI0 452 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SLC9B1P1A6NJY1 282 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 E9PAM4 449 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SLC33A1O00400 549 aaPredicted RBP3.98□□□□□ -1.77
NUP88-213ENST00000576862 BUB1O43683 1085 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 CIAO1O76071 339 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 REC8O95072 547 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 OR6A2O95222 327 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SMC2O95347 1197 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 IGKV3-15P01624 115 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 ALPPP05187 535 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 ALPPL2P10696 532 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 ANPEPP15144 967 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 GPX3P22352 226 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 GALP22466 123 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SERPINB6P35237 376 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 NF2P35240 595 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 MAGEA4P43358 317 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 RABIFP47224 123 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 HADHBP55084 474 aaKnown RBP3.98□□□□□ -1.77
NUP88-213ENST00000576862 STX1BP61266 288 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 ASIC1P78348 528 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 GABPAQ06546 454 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SPAG1Q07617 926 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 GPM6BQ13491 265 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 MEF2DQ14814 521 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 AARDQ4LEZ3 155 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 LRRC23Q53EV4 343 aaPredicted RBP3.98□□□□□ -1.77
NUP88-213ENST00000576862 VWA2Q5GFL6 755 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SPATA46Q5T0L3 261 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 LCE3EQ5T5B0 92 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 VITQ6UXI7 678 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 CCDC65Q8IXS2 484 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 SYCP3Q8IZU3 236 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 CLYBLQ8N0X4 340 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 FAM133AQ8N9E0 248 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 TRPV3Q8NET8 790 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 OR6T1Q8NGN1 323 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 ACMSDQ8TDX5 336 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 GANCQ8TET4 914 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 PRCCQ92733 491 aaPredicted RBP3.98□□□□□ -1.77
NUP88-213ENST00000576862 NTNG2Q96CW9 530 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 ARL5BQ96KC2 179 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 RUFY1Q96T51 708 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 CCSER1Q9C0I3 900 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 CXXC4Q9H2H0 198 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 TRMT112Q9UI30 125 aaKnown RBP3.98□□□□□ -1.77
NUP88-213ENST00000576862 UBR2Q8IWV8 1755 aa3.98□□□□□ -1.77
NUP88-213ENST00000576862 FER1L5A0AVI2 2057 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms