RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	SRP14	P37108	136 aa	Known RBP	10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	COMP	P49747	757 aa	Predicted RBP	10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	ARFIP1	P53367	373 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	GPX6	P59796	221 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	ACTG1	P63261	375 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	EFR3A	Q14156	821 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	CDKL4	Q5MAI5	379 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	NPSR1	Q6W5P4	371 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	LRRC70	Q7Z2Q7	622 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	NUFIP2	Q7Z417	695 aa	Known RBP	10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	GALNT10	Q86SR1	603 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	NUDT13	Q86X67	352 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	PPIL6	Q8IXY8	311 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	RNF10	Q8N5U6	811 aa	Known RBP	10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	DUSP19	Q8WTR2	217 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	KISS1R	Q969F8	398 aa	Predicted RBP	10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	CAB39L	Q9H9S4	337 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	NPAP1	Q9NZP6	1156 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	CES1P1	Q9UKY3	287 aa		10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	MCTS1	Q9ULC4	181 aa	Known RBP	10.42	□□□□□ -0.74
CLK3-222	ENST00000568232	WISP3	O95389	354 aa	Predicted RBP	10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	ATP1B1	P05026	303 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	KLK1	P06870	262 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	TUBB	P07437	444 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	CTAGE8	P0CG41	777 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	CD1D	P15813	335 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	EVI2B	P34910	448 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	KRT20	P35900	424 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	NR4A2	P43354	598 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	PNLIPRP2	P54317	469 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	SPOCK1	Q08629	439 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	CUL3	Q13618	768 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	GANAB	Q14697	944 aa	Known RBP	10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	STK11	Q15831	433 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	RNASEH2B	Q5TBB1	312 aa	Known RBP	10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	TFAP2E	Q6VUC0	442 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	TMEM139	Q8IV31	216 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	CTAGE4	Q8IX94	777 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	MUC15	Q8N387	334 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	SEMA6D	Q8NFY4	1073 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	UHMK1	Q8TAS1	419 aa	Known RBP	10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	MAGOHB	Q96A72	148 aa	Known RBP	10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	C1GALT1C1	Q96EU7	318 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	ADGRG7	Q96K78	797 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	BTBD9	Q96Q07	612 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	NPAS1	Q99742	590 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	LRRC1	Q9BTT6	524 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	DDX47	Q9H0S4	455 aa	Known RBP	10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	GLRX2	Q9NS18	164 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	PRODH2	Q9UF12	536 aa		10.41	□□□□□ -0.74
CLK3-222	ENST00000568232	ESYT3	A0FGR9	886 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232		H7C417	338 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232		K7EPI3	171 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	TNFSF11	O14788	317 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	PHGDH	O43175	533 aa	Known RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	FADS1	O60427	444 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	PIAS1	O75925	651 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	SYNGR4	O95473	234 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	S100B	P04271	92 aa	Predicted RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	ELK3	P41970	407 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	PIK3CG	P48736	1102 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	FABP6	P51161	128 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	EFNA4	P52798	201 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	PPA1	Q15181	289 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	CPSF6	Q16630	551 aa	Known RBP eCLIP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	TMEM44	Q2T9K0	475 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	SLC48A1	Q6P1K1	146 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	B3GLCT	Q6Y288	498 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	BHLHA15	Q7RTS1	189 aa	Predicted RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	TUSC5	Q8IXB3	177 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	FBXL14	Q8N1E6	418 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	OR2W6P	Q8NHA6	318 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	KAT2A	Q92830	837 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	GCDH	Q92947	438 aa	Predicted RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	FOXN4	Q96NZ1	517 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	BAG1	Q99933	345 aa	Predicted RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	DHRS9	Q9BPW9	319 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	NAT9	Q9BTE0	207 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	POTEKP	Q9BYX7	375 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	BHLHE41	Q9C0J9	482 aa	Predicted RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	PTGES2	Q9H7Z7	377 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	OPTC	Q9UBM4	332 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	CHMP2B	Q9UQN3	213 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	MTO1	Q9Y2Z2	717 aa	Known RBP	10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	PCDHGA11	Q9Y5H2	935 aa		10.4	□□□□□ -0.74
CLK3-222	ENST00000568232	CAD	P27708	2225 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	PRKDC	P78527	4128 aa	Known RBP	10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	TMEM89	A2RUT3	159 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	GOLGA6L10	A6NI86	522 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	ZNF814	B7Z6K7	855 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	RGS9	O75916	674 aa	Predicted RBP	10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	LYZL6	O75951	148 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	CSF3	P09919	207 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	CREB1	P16220	341 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	CSNK2A2	P19784	350 aa	Predicted RBP	10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	ITGAD	Q13349	1161 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	GLYR1	Q49A26	553 aa	Predicted RBP	10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	PRR31	Q5SQ13	230 aa		10.39	□□□□□ -0.75
CLK3-222	ENST00000568232	CCDC137	Q6PK04	289 aa	Known RBP	10.39	□□□□□ -0.75
CLK3-222	ENST00000568232		Q6ZSR9	355 aa		10.39	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms