RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 POGLUT1Q8NBL1 392 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 OR4C3Q8NH37 302 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 OSBPL11Q9BXB4 747 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 DEFB127Q9H1M4 99 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 RMND5AQ9H871 391 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 IL1RL2Q9HB29 575 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 TMEM45AQ9NWC5 275 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 GIN1Q9NXP7 522 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 KLRF1Q9NZS2 232 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 ARMCX1Q9P291 453 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 PCDHB14Q9Y5E9 798 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 GTF3C1Q12789 2109 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 ESPL1Q14674 2120 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 MED12Q93074 2177 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 A0A1W2PP18 115 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 GNB5O14775 395 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 SCO2O43819 266 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 MAGEA5P43359 124 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 PSPHP78330 225 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 LRRC74AQ0VAA2 488 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 DCST2Q5T1A1 773 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLN3-225ENST00000566824 TMEM81Q6P7N7 255 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 BHLHB9Q6PI77 547 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 ANGPTL8Q6UXH0 198 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 FGD2Q7Z6J4 655 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 MARCH3Q86UD3 253 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 CHERPQ8IWX8 916 aaKnown RBP17.87■□□□□ 0.45
CLN3-225ENST00000566824 TMCO6Q96DC7 493 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 GNRHR2Q96P88 292 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 ZFP64Q9NPA5 681 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 LIPGQ9Y5X9 500 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 POLEQ07864 2286 aa17.87■□□□□ 0.45
CLN3-225ENST00000566824 A0A096LPI6 279 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 TRBV5-3A0A0A0MS03 114 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 HMGN4O00479 90 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 FBP2O00757 339 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 TFECO14948 347 aaPredicted RBP17.86■□□□□ 0.45
CLN3-225ENST00000566824 SNX3O60493 162 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 PDE9AO76083 593 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 UNC5CO95185 931 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 ANP32DO95626 131 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 KRT16P08779 473 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 EVI2BP34910 448 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 RPP38P78345 283 aaKnown RBP17.86■□□□□ 0.45
CLN3-225ENST00000566824 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLN3-225ENST00000566824 HYAL4Q2M3T9 481 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 LRIF1Q5T3J3 769 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 OR5M10Q6IEU7 315 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 SLC30A6Q6NXT4 461 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 DLEU7Q6UYE1 221 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 CPLX4Q7Z7G2 160 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 C10orf111Q8N326 155 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 TRIML2Q8N7C3 387 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 WDSUB1Q8N9V3 476 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 XAGE5Q8WWM1 108 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 SDF2Q99470 211 aa17.86■□□□□ 0.45
CLN3-225ENST00000566824 HIVEP3Q5T1R4 2406 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 RELNP78509 3460 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 ASNA1O43681 348 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 FCMRO60667 390 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 SNX4O95219 450 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 SNRPB2P08579 225 aaKnown RBP17.85■□□□□ 0.45
CLN3-225ENST00000566824 ETFAP13804 333 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 EDN3P14138 238 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 KHKP50053 298 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 SNTA1Q13424 505 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 TBCELQ5QJ74 424 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 HEPHL1Q6MZM0 1159 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 GALNT11Q8NCW6 608 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 CHDHQ8NE62 594 aaPredicted RBP17.85■□□□□ 0.45
CLN3-225ENST00000566824 TMEM41AQ96HV5 264 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 ZNF597Q96LX8 424 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 GPR137Q96N19 417 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 TRIM8Q9BZR9 551 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 IKZF5Q9H5V7 419 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 ZNF703Q9H7S9 590 aaPredicted RBP17.85■□□□□ 0.45
CLN3-225ENST00000566824 ZDHHC11Q9H8X9 412 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 TPT1P8Q9HAU6 139 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 VAPAQ9P0L0 249 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 KCNE5Q9UJ90 142 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 MRTO4Q9UKD2 239 aaKnown RBP17.85■□□□□ 0.45
CLN3-225ENST00000566824 BOKQ9UMX3 212 aaPredicted RBP17.85■□□□□ 0.45
CLN3-225ENST00000566824 WIF1Q9Y5W5 379 aa17.85■□□□□ 0.45
CLN3-225ENST00000566824 CENPVL1A0A0U1RR11 272 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 J3QKU1 62 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 SNPHO15079 494 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 OXSR1O95747 527 aaPredicted RBP17.84■□□□□ 0.45
CLN3-225ENST00000566824 STX5Q13190 355 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 MAPK11Q15759 364 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 SYPL1Q16563 259 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 ARHGAP11BQ3KRB8 267 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 TIGD3Q6B0B8 471 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 HMGN2P46Q86SG4 172 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 MTDHQ86UE4 582 aaKnown RBP17.84■□□□□ 0.45
CLN3-225ENST00000566824 PACS2Q86VP3 889 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 ANKFN1Q8N957 763 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 GATSQ8NAP1 163 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 ST6GALNAC3Q8NDV1 305 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 KLHDC3Q9BQ90 382 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms