RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CCL27Q9Y4X3 112 aa15.44■□□□□ 0.06
CLN3-216ENST00000565316 TTC36A6NLP5 189 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 CGAP01215 116 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 PROCP04070 461 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 MYL2P10916 166 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 NTSP30990 170 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 CD79BP40259 229 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 DNAJB13P59910 316 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 IMPG1Q17R60 797 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 SH2D4BQ5SQS7 431 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 VWA1Q6PCB0 445 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 BTLAQ7Z6A9 289 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 CDC26Q8NHZ8 85 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 DUSP19Q8WTR2 217 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 FIG4Q92562 907 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 HOXB13Q92826 284 aaPredicted RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 C1GALT1C1Q96EU7 318 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 PTGES2Q9H7Z7 377 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 Q9N2J8 555 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 TNFRSF12AQ9NP84 129 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 DDX18Q9NVP1 670 aaKnown RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 MRTO4Q9UKD2 239 aaKnown RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 EIF3LQ9Y262 564 aaKnown RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 POLR3HQ9Y535 204 aaPredicted RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 A0A1W2PPM1 405 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 OR2M5A3KFT3 312 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 DEFB108AA8MXU0 73 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 NPIPB8E9PQR5 432 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 H0YC42 278 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 CTIFO43310 598 aaKnown RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 EMC8O43402 210 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 PRPH2P23942 346 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 CPOXP36551 454 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 MAP3K8P41279 467 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 PSMD4P55036 377 aaKnown RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 TPD52P55327 224 aaPredicted RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 KIAA0040Q15053 153 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 GUSBP1Q15486 140 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 ZNHIT3Q15649 155 aaPredicted RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 TMEM44Q2T9K0 475 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 RAET1LQ5VY80 246 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 MARCH3Q86UD3 253 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 UBQLNLQ8IYU4 475 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 CNEP1R1Q8N9A8 125 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 PGM2Q96G03 612 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 ZNF764Q96H86 408 aaPredicted RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 WFIKKN1Q96NZ8 548 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 PIGQQ9BRB3 760 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 RNF122Q9H9V4 155 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 RRAGDQ9NQL2 400 aaPredicted RBP15.43■□□□□ 0.06
CLN3-216ENST00000565316 ELOVL5Q9NYP7 299 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 TBK1Q9UHD2 729 aa15.43■□□□□ 0.06
CLN3-216ENST00000565316 SIAH2O43255 324 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 PLIN3O60664 434 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 GLRA3O75311 464 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 SMNDC1O75940 238 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLN3-216ENST00000565316 UTS2O95399 124 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 UROSP10746 265 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 CD8BP10966 210 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 UGT2B10P36537 528 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 CLK3P49761 638 aaKnown RBP15.42■□□□□ 0.06
CLN3-216ENST00000565316 CLDN20P56880 219 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 PRR5P85299 388 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 STX5Q13190 355 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 FGFBP1Q14512 234 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 APOOLQ6UXV4 268 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 BIVMQ86UB2 503 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 METTL25Q8N6Q8 603 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 CEP112Q8N8E3 955 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 EGLN2Q96KS0 407 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 OPN3Q9H1Y3 402 aaPredicted RBP15.42■□□□□ 0.06
CLN3-216ENST00000565316 OXSMQ9NWU1 459 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 AP4B1Q9Y6B7 739 aa15.42■□□□□ 0.06
CLN3-216ENST00000565316 KIF2AO00139 706 aaPredicted RBP15.41■□□□□ 0.06
CLN3-216ENST00000565316 TBX19O60806 448 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 CRCPO75575 148 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 IGKV1D-16P01601 117 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 CRYGSP22914 178 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 CCKARP32238 428 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 GABRA3P34903 492 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 C17orf67Q0P5P2 114 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 CCDC153Q494R4 210 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 SHEQ5VZ18 495 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 OR5M1Q8NGP8 315 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 FNDC9Q8TBE3 224 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 ZNF845Q96IR2 970 aaPredicted RBP15.41■□□□□ 0.06
CLN3-216ENST00000565316 C18orf12Q96KH6 178 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 MARK4Q96L34 752 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 FCRL1Q96LA6 429 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 PIP5K1AQ99755 562 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 SLC39A3Q9BRY0 314 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 PINK1Q9BXM7 581 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 C3orf14Q9HBI5 128 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 NTMQ9P121 344 aa15.41■□□□□ 0.06
CLN3-216ENST00000565316 GXYLT2A0PJZ3 443 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 SEC14L5O43304 696 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 SEC22BO75396 215 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 ANGPTL1O95841 491 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 NGFRP08138 427 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 PRPS2P11908 318 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms