RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PRMT5O14744 637 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 ARPC5O15511 151 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 LANCL1O43813 399 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 KLK8O60259 260 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 OR10H3O60404 316 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 N4BP1O75113 896 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 TAF5LO75529 589 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 BANF1O75531 89 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SLCO2B1O94956 709 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ACSL3O95573 720 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 NDUFB10O96000 172 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ADAP00813 363 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 IGKV2-30P06310 120 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ALPIP09923 528 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 FAM58BPP0C7Q3 252 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 GSTM3P21266 225 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 TGM2P21980 687 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 UGT1A4P22310 534 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ERP29P30040 261 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 C21orf33P30042 268 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 SHMT2P34897 504 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 UGT1A3P35503 534 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 UGT1A5P35504 534 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 UGT2B10P36537 528 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ARR3P36575 388 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 NR4A2P43354 598 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 RBP2P50120 134 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 RAB9AP51151 201 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 MMP15P51511 669 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 DNA2P51530 1060 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ERVS71-1P61550 626 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 RPL7AP62424 266 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 ERVK-25P63136 954 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 VLDLRP98155 873 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 PITPNAQ00169 270 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 MYBPC1Q00872 1141 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 CSTF1Q05048 431 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 GABPAQ06546 454 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 MGAT3Q09327 533 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 PDIA2Q13087 525 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 TFDP2Q14188 446 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 IL11RAQ14626 422 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C16orf72Q14CZ0 275 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 PSG3Q16557 428 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 PCK2Q16822 640 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 IMPG1Q17R60 797 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C18orf21Q32NC0 220 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 AASDHQ4L235 1098 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 ZNF789Q5FWF6 425 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 PRAMEF19Q5SWL8 479 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 LRIF1Q5T3J3 769 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C10orf25Q5T742 122 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 TIGD3Q6B0B8 471 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C11orf63Q6NUN7 778 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 BRAT1Q6PJG6 821 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SPESP1Q6UW49 350 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 DEF8Q6ZN54 512 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C17orf107Q6ZR85 190 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ASB18Q6ZVZ8 466 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 DPPA4Q7L190 304 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C16orf62Q7Z3J2 963 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ADGRD2Q7Z7M1 963 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 IGFN1Q86VF2 1251 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SLC26A11Q86WA9 606 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 FOXP4Q8IVH2 680 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 ZNF100Q8IYN0 542 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 FAM71AQ8IYT1 594 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 NANOGP1Q8N7R0 232 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 MCUQ8NE86 351 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 DNAAF1Q8NEP3 725 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 OR56B1Q8NGI3 324 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 OR52H1Q8NGJ2 320 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 OR52B4Q8NGK2 314 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 FAM222BQ8WU58 562 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ASB5Q8WWX0 329 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ATOH1Q92858 354 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 C18orf25Q96B23 403 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 SPSB1Q96BD6 273 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 OTULINQ96BN8 352 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 DCPSQ96C86 337 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 L3HYPDHQ96EM0 354 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 DTD2Q96FN9 168 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 LRRC46Q96FV0 321 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 CERS2Q96G23 380 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 TXNDC15Q96J42 360 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 CAPZA3Q96KX2 299 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 C3orf30Q96M34 536 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SIGLEC11Q96RL6 698 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 CCT8L2Q96SF2 557 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 GAD1Q99259 594 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 MAP3K3Q99759 626 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 PRMT1Q99873 361 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 NIPSNAP1Q9BPW8 284 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 INPP5KQ9BT40 448 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 MED18Q9BUE0 208 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 IFT27Q9BW83 186 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SMYD3Q9H7B4 428 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 KIR3DX1Q9H7L2 352 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ZNF430Q9H8G1 570 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 GPN2Q9H9Y4 310 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms