RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 MCF2P10911 925 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ENO3P13929 434 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 POU2F1P14859 743 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 PPP2R1BP30154 601 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 OXTRP30559 389 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 CASP14P31944 242 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 EVI2BP34910 448 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ETV5P41161 510 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 POU3F4P49335 361 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 CCL23P55773 120 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 FKBP3Q00688 224 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 LRRC63Q05C16 580 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 FOXL1Q12952 345 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 GAGE2BQ13066 116 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 EXOSC7Q15024 291 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 MRPL23Q16540 153 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 UGT3A2Q3SY77 523 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 SPDYE7PQ495Y7 208 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 GGTA1PQ4G0N0 100 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 GAGE2EQ4V326 116 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 PHLDA2Q53GA4 152 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ZNF542PQ5EBM4 170 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 NT5DC1Q5TFE4 455 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 HIST2H2AA3Q6FI13 130 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 GAGE2AQ6NT46 116 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 TMEM107Q6UX40 140 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RBM44Q6ZP01 1051 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 CPEB2Q7Z5Q1 589 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 GPR141Q7Z602 305 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 DEFB128Q7Z7B8 93 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 KIAA1328Q86T90 577 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 SFTPA2Q8IWL1 248 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 PCDH20Q8N6Y1 951 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RHEBL1Q8TAI7 183 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 HCAR2Q8TDS4 363 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 SLC25A43Q8WUT9 341 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 P3H4Q92791 437 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 BADQ92934 168 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 MTERF3Q96E29 417 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 CERS2Q96G23 380 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 SH3YL1Q96HL8 342 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RBM41Q96IZ5 413 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 C20orf173Q96LM9 149 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 OR14A2Q96R54 314 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 OMDQ99983 421 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 CCDC3Q9BQI4 270 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 HINT2Q9BX68 163 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 SPRTNQ9H040 489 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RHOJQ9H4E5 214 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 FAM124BQ9H5Z6 455 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 KAT8Q9H7Z6 458 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 MTHFD2LQ9H903 347 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 UCK1Q9HA47 277 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 IL1RL2Q9HB29 575 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 SLC52A3Q9NQ40 469 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RGS18Q9NS28 235 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 GAGE2DQ9UEU5 116 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 ST3GAL5Q9UNP4 418 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RASD1Q9Y272 281 aa4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 RBMX2Q9Y388 322 aaKnown RBP4.73□□□□□ -1.65
VPS35P1-201ENST00000563400 KIAA0100Q14667 2235 aaKnown RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 A0A1B0GUA9 196 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 LRRC3CA6NJW4 275 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 E9PMD0 336 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 GOLGA6L19H0YKK7 550 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 I6L893 689 aaPredicted RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 CHEK1O14757 476 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 INPPL1O15357 1258 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 SPINT2O43291 252 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 TXNDC12O95881 172 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 TNNC2P02585 160 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 VTNP04004 478 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 CCNB1P14635 433 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ETS2P15036 469 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 CLDN20P56880 219 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 YWHAGP61981 247 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 GTF2BQ00403 316 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 EEF1A2Q05639 463 aaKnown RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ZFP36L1Q07352 338 aaKnown RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ST3GAL1Q11201 340 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 SMARCB1Q12824 385 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 SPHARQ15513 63 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 KNOP1Q1ED39 458 aaKnown RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ARMCX4Q5H9R4 360 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 C6orf226Q5I0X4 101 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 EARS2Q5JPH6 523 aaKnown RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 NDUFAF5Q5TEU4 345 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ZNF658Q5TYW1 1059 aaPredicted RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 GPR157Q5UAW9 335 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 SLC22A10Q63ZE4 541 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 NAIF1Q69YI7 327 aaPredicted RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 PTRHD1Q6GMV3 140 aaKnown RBP4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 C11orf63Q6NUN7 778 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 C8orf74Q6P047 294 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ARMCX5Q6P1M9 558 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 TMEM71Q6P5X7 295 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 NAPRTQ6XQN6 538 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ZNF720Q7Z2F6 126 aa4.72□□□□□ -1.65
VPS35P1-201ENST00000563400 ADHFE1Q8IWW8 467 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms