RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ATP1A4Q13733 1029 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 DUSP7Q16829 419 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 RSPO4Q2I0M5 234 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 EXOC3L2Q2M3D2 409 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 TUSC1Q2TAM9 212 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ASCL5Q7RTU5 278 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 NANOGNBQ7Z5D8 188 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ARHGAP22Q7Z5H3 698 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 YRDCQ86U90 279 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 TEX19Q8NA77 164 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF540Q8NDQ6 660 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 DACT3Q96B18 629 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 TMCO6Q96DC7 493 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 OR5B2Q96R09 309 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 FOLH1BQ9HBA9 442 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ATP13A2Q9NQ11 1180 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 LHX9Q9NQ69 397 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 SDHAF3Q9NRP4 125 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CLEC4AQ9UMR7 237 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ANKRD36A6QL64 1941 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 LOC100506127A0A0U1RQW1 187 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 LINC00854A0A1B0GVQ3 168 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 SLC35F4A4IF30 521 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 HNRNPCL2B2RXH8 293 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 NKX2-8O15522 239 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 RNF13O43567 381 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 IGHV3-9P01782 118 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 GPIP06744 558 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 MRPL3P09001 348 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 SLC35E2P0CK97 266 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 IMPDH2P12268 514 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CKMT1AP12532 417 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 FMO3P31513 532 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 DCTP40126 519 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 EIF2S3P41091 472 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 RXRGP48443 463 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 DNASE1L1P49184 302 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CLK1P49759 484 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 OR2B6P58173 313 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CDC42P60953 191 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 RAE1P78406 368 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 KCNJ10P78508 379 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 FADDQ13158 208 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CCNIQ14094 377 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 NKG7Q16617 165 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 RFX4Q33E94 735 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 EIPR1Q53HC9 387 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 GARNL3Q5VVW2 1013 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 NIPAL1Q6NVV3 410 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 B3GLCTQ6Y288 498 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 AHSA2Q719I0 299 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 NUP54Q7Z3B4 507 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CPEB2Q7Z5Q1 589 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 UBE3DQ7Z6J8 389 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 NRMQ8IXM6 262 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 C8orf59Q8N0T1 100 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 SYT14Q8NB59 555 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 SLC38A9Q8NBW4 561 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 OR8J3Q8NGG0 315 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 OR6N1Q8NGY5 312 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ADAMTS16Q8TE57 1224 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 KCNE4Q8WWG9 221 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 UTP4Q969X6 686 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 OMA1Q96E52 524 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CENPNQ96H22 339 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 FBXL20Q96IG2 436 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 FAM46AQ96IP4 442 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF583Q96ND8 569 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 TAAR9Q96RI9 348 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 GAL3ST1Q99999 423 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 GPATCH1Q9BRR8 931 aaKnown RBP5.06□□□□□ -1.6
VPS13C-209ENST00000560637 G6PC3Q9BUM1 346 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 TSSK6Q9BXA6 273 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 DEFB127Q9H1M4 99 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CXorf21Q9HAI6 301 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 CENPMQ9NSP4 180 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 GPR52Q9Y2T5 361 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 C2orf16Q68DN1 1984 aa5.06□□□□□ -1.6
VPS13C-209ENST00000560637 VGLL3A8MV65 326 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 LRRN3E7EW58 273 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SOCS2O14508 198 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TFECO14948 347 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ASNA1O43681 348 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 BCAS2O75934 225 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 THRBP10828 461 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SMIM11AP58511 58 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DUSP2Q05923 314 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 KIAA0040Q15053 153 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PIGGQ5H8A4 983 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MFSD12Q6NUT3 480 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TBPL2Q6SJ96 375 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF574Q6ZN55 896 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 Q6ZPB1 254 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OAFQ86UD1 273 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 EPHX4Q8IUS5 362 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CACTIN-AS1Q8N1I8 211 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OR9Q1Q8NGQ5 310 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms