RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KRT20P35900 424 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 CRISP3P54108 245 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 DCAF7P61962 342 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 MRPS35P82673 323 aaKnown RBP10.89□□□□□ -0.67
LDLR-212ENST00000560467 CDK6Q00534 326 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 TRMT12Q53H54 448 aaKnown RBP10.89□□□□□ -0.67
LDLR-212ENST00000560467 SFT2D3Q587I9 215 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 GLYATQ6IB77 296 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 REEP3Q6NUK4 255 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 TNFAIP8L2Q6P589 184 aaPredicted RBP10.89□□□□□ -0.67
LDLR-212ENST00000560467 FAM111BQ6SJ93 734 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 SLC29A4Q7RTT9 530 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 CPEB2Q7Z5Q1 589 aaKnown RBP10.89□□□□□ -0.67
LDLR-212ENST00000560467 MRGPRGQ86SM5 289 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 PATL1Q86TB9 770 aaKnown RBP10.89□□□□□ -0.67
LDLR-212ENST00000560467 LAPTM4BQ86VI4 370 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 EID3Q8N140 333 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 FAM13CQ8NE31 585 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 HIPK4Q8NE63 616 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 OR7G2Q8NG99 324 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 OR52R1Q8NGF1 315 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 OR5L2Q8NGL0 311 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 MIPOL1Q8TD10 442 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 GPR151Q8TDV0 419 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 FBXL20Q96IG2 436 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 NSMCE2Q96MF7 247 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 OR10A5Q9H207 317 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 OR51I1Q9H343 314 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 TMEM38AQ9H6F2 299 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 YY1AP1Q9H869 796 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 SLC6A13Q9NSD5 602 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 MAT2BQ9NZL9 334 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 ACTR3BQ9P1U1 418 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 RPS6KA6Q9UK32 745 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 SLC13A4Q9UKG4 626 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 PACSIN3Q9UKS6 424 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 ERVK-19Q9WJR5 959 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 OR10H1Q9Y4A9 318 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 CELSR1Q9NYQ6 3014 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 NSG1A0A0A6YYJ2 146 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 OR2W5A6NFC9 320 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 AQP12BA6NM10 295 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 OR6C76A6NM76 312 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 CCL21O00585 134 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 WISP2O76076 250 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 SERPINA7P05543 415 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 COX6B1P14854 86 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ATP6V1C1P21283 382 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 PSMA4P25789 261 aaKnown RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 MSX2P35548 267 aaPredicted RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 PSMD4P55036 377 aaKnown RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 CASP9P55211 416 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ACTR3P61158 418 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 PMP22Q01453 160 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 SCARB2Q14108 478 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 SELPLGQ14242 412 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 INAQ16352 499 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 GPAT3Q53EU6 434 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 MFSD12Q6NUT3 480 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 CDC73Q6P1J9 531 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ZFP1Q6P2D0 407 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 NDUFAF7Q7L592 441 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ANKRD37Q7Z713 158 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 CALHM3Q86XJ0 350 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 SLC44A2Q8IWA5 706 aaPredicted RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 AQP12AQ8IXF9 295 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ZNF808Q8N4W9 903 aaPredicted RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 GOLM1Q8NBJ4 401 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 BHLHE22Q8NFJ8 381 aaPredicted RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 RASSF5Q8WWW0 418 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 TSLPQ969D9 159 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 CTHRC1Q96CG8 243 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 RNF145Q96MT1 663 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 STACQ99469 402 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 YIPF4Q9BSR8 244 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 G6PC3Q9BUM1 346 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 UGT2B28Q9BY64 529 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 TRIM8Q9BZR9 551 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.88□□□□□ -0.67
LDLR-212ENST00000560467 PCDHAC1Q9H158 963 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 PIGUQ9H490 435 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ARMC7Q9H6L4 198 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 GORASP2Q9H8Y8 452 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 Q9N2J8 555 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 A4GALTQ9NPC4 353 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 GIN1Q9NXP7 522 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 EGFL7Q9UHF1 273 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ITGB1BP2Q9UKP3 347 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 BAG5Q9UL15 447 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 ZNF232Q9UNY5 417 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 SAMD4AQ9UPU9 718 aaKnown RBP10.88□□□□□ -0.67
LDLR-212ENST00000560467 ZFHX3Q15911 3703 aa10.88□□□□□ -0.67
LDLR-212ENST00000560467 MYO7BQ6PIF6 2116 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 ARPC2O15144 300 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 FKBP6O75344 327 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 TNFRSF21O75509 655 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 WDPCPO95876 746 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 OR12D1P0DN82 309 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 UMPSP11172 480 aa10.87□□□□□ -0.67
LDLR-212ENST00000560467 BMP2P12643 396 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms