RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 BTBD2Q9BX70 525 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 GPATCH2Q9NW75 528 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 ZIM2Q9NZV7 527 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 PPP4R1LQ9P1A2 415 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 BTNL2Q9UIR0 455 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 ACAD8Q9UKU7 415 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 MEMO1Q9Y316 297 aa11.4□□□□□ -0.58
SLIRP-209ENST00000557342 NCOA6Q14686 2063 aaPredicted RBP11.4□□□□□ -0.58
SLIRP-209ENST00000557342 DOPEY2Q9Y3R5 2298 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 RNF103-CHMP3A0A140T963 221 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 C2orf72A6NCS6 295 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 FIGNL2A6NMB9 653 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 ZNHIT1O43257 154 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SCO2O43819 266 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 FADS1O60427 444 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SCN2BO60939 215 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SLC22A3O75751 556 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 KCNK2O95069 426 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 UTS2O95399 124 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 CPSF4O95639 269 aaKnown RBP11.39□□□□□ -0.59
SLIRP-209ENST00000557342 IL6P05231 212 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 PGRP06401 933 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 MATN1P21941 496 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 UQCRC2P22695 453 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SMSP52788 366 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 GAS1P54826 345 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 PHC1P78364 1004 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 IRX1P78414 480 aaPredicted RBP11.39□□□□□ -0.59
SLIRP-209ENST00000557342 GXYLT1Q4G148 440 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 TMEM211Q6ICI0 200 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 C6orf120Q7Z4R8 191 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 MTERF4Q7Z6M4 381 aaKnown RBP11.39□□□□□ -0.59
SLIRP-209ENST00000557342 ANKRD46Q86W74 232 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 MIER2Q8N344 545 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 TRIML2Q8N7C3 387 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 WDSUB1Q8N9V3 476 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 OR5AK3PQ8NH89 298 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 CDS1Q92903 461 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 CCDC120Q96HB5 630 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SLC35G5Q96KT7 338 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 TEX37Q96LM6 180 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 CCDC115Q96NT0 180 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 PHF12Q96QT6 1004 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 OR52E6Q96RD3 313 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 TBL1XR1Q9BZK7 514 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SLC6A15Q9H2J7 730 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 TCF7L2Q9NQB0 619 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SERHLQ9NQF3 203 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 SDR39U1Q9NRG7 319 aaPredicted RBP11.39□□□□□ -0.59
SLIRP-209ENST00000557342 FAM53CQ9NYF3 392 aa11.39□□□□□ -0.59
SLIRP-209ENST00000557342 MRPS18CQ9Y3D5 142 aaKnown RBP11.39□□□□□ -0.59
SLIRP-209ENST00000557342 PCNX3Q9H6A9 2034 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 C15orf38-AP3S2A0A0A6YYH1 394 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 ZG16O60844 167 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 WDR1O75083 606 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 AGR2O95994 175 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 AK1P00568 194 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 IGKV1D-16P01601 117 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 NGFRP08138 427 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 HOXD4P09016 255 aaPredicted RBP11.38□□□□□ -0.59
SLIRP-209ENST00000557342 RNF224P0DH78 156 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 GABRA1P14867 456 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 HPGDP15428 266 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 AGAP20933 346 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 ATP6V1C1P21283 382 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 TBXA2RP21731 343 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 IL12AP29459 219 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 SRD5A2P31213 254 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 TRPC1P48995 793 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 IDH3AP50213 366 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 AQP5P55064 265 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 STX1BP61266 288 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 C17orf67Q0P5P2 114 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 GRAMD1BQ3KR37 738 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 NHSL2Q5HYW2 709 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 FIGNL1Q6PIW4 674 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 XKRXQ6PP77 449 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 PM20D2Q8IYS1 436 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 ZNF808Q8N4W9 903 aaPredicted RBP11.38□□□□□ -0.59
SLIRP-209ENST00000557342 FAM83FQ8NEG4 500 aaPredicted RBP11.38□□□□□ -0.59
SLIRP-209ENST00000557342 OR4K17Q8NGC6 315 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 GOT1L1Q8NHS2 421 aaPredicted RBP11.38□□□□□ -0.59
SLIRP-209ENST00000557342 STON2Q8WXE9 905 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 OTUB1Q96FW1 271 aaPredicted RBP11.38□□□□□ -0.59
SLIRP-209ENST00000557342 OR7D2Q96RA2 312 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 PANX1Q96RD7 426 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 SIKE1Q9BRV8 207 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 OR2B2Q9GZK3 357 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 HOXD1Q9GZZ0 328 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 PTGES2Q9H7Z7 377 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 UBQLN4Q9NRR5 601 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 PNPLA3Q9NST1 481 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 FLRT3Q9NZU0 649 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 SPRR3Q9UBC9 169 aa11.38□□□□□ -0.59
SLIRP-209ENST00000557342 ALG1L2C9J202 215 aa11.37□□□□□ -0.59
SLIRP-209ENST00000557342 SCDO00767 359 aa11.37□□□□□ -0.59
SLIRP-209ENST00000557342 ACTL6AO96019 429 aa11.37□□□□□ -0.59
SLIRP-209ENST00000557342 ENDOUP21128 410 aaKnown RBP11.37□□□□□ -0.59
SLIRP-209ENST00000557342 ACVR2AP27037 513 aa11.37□□□□□ -0.59
SLIRP-209ENST00000557342 PTGER4P35408 488 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms