RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TYW3Q6IPR3 259 aaKnown RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC25A25Q6KCM7 469 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 APOOLQ6UXV4 268 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 NET1Q7Z628 596 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 ZZZ3Q8IYH5 903 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 GOLM1Q8NBJ4 401 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 RBM15BQ8NDT2 890 aaKnown RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 PSD4Q8NDX1 1056 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 RNF138Q8WVD3 245 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC39A7Q92504 469 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 TM9SF4Q92544 642 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 NTNG2Q96CW9 530 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SCMH1Q96GD3 660 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SGCZQ96LD1 299 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF583Q96ND8 569 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 HOPXQ9BPY8 73 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF350Q9GZX5 532 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 QRSL1Q9H0R6 528 aaKnown RBP11.76□□□□□ -0.53
SHMT2-227ENST00000557269 SLC25A18Q9H1K4 315 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 RAD21L1Q9H4I0 556 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 EXD2Q9NVH0 621 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 PACSIN3Q9UKS6 424 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 MKLN1Q9UL63 735 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 CORO2BQ9UQ03 480 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 NBEAQ8NFP9 2946 aa11.76□□□□□ -0.53
SHMT2-227ENST00000557269 CACNA1BQ00975 2339 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 NPIPB9F8W1W9 429 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 CDK2AP1O14519 115 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SLC28A2O43868 658 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 NME2P1O60361 137 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 FADS1O60427 444 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SOX30O94993 753 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 AGR2O95994 175 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 BCHEP06276 602 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 ARAFP10398 606 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 NR2F1P10589 423 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 NME2P22392 152 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 CALB2P22676 271 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 CASP3P42574 277 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 DNASE1L1P49184 302 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 TMED10P49755 219 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 ANXA11P50995 505 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 GPR85P60893 370 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 TXNL4AP83876 142 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 EFR3AQ14156 821 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF169Q14929 603 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 INPP5JQ15735 1006 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 GPR68Q15743 365 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 MAPK14Q16539 360 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 FRRS1Q6ZNA5 592 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 GALNTL5Q7Z4T8 443 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SERPINA11Q86U17 422 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 PTRH1Q86Y79 214 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SULF2Q8IWU5 870 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 DND1Q8IYX4 353 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 Q8NA96 180 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 NFKBIDQ8NI38 313 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 GRHL3Q8TE85 626 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 WBP1Q96G27 269 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 TMEM19Q96HH6 336 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 BBC3Q96PG8 261 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 TRNT1Q96Q11 434 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SH3GL1Q99961 368 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 G6PC3Q9BUM1 346 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 RSPO3Q9BXY4 272 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SAP130Q9H0E3 1048 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 SLC38A1Q9H2H9 487 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 GALNT9Q9HCQ5 603 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 TIMMDC1Q9NPL8 285 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 P2RX2Q9UBL9 471 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 MRTO4Q9UKD2 239 aaKnown RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 LIPT1Q9Y234 373 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 B3GNT3Q9Y2A9 372 aa11.75□□□□□ -0.53
SHMT2-227ENST00000557269 KMT2BQ9UMN6 2715 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-227ENST00000557269 TRAV17A0A0B4J275 112 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 B4DXG7 233 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TP53I11O14683 189 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 ATXN7O15265 892 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 STX11O75558 287 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 GCM2O75603 506 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 AK1P00568 194 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 CD46P15529 392 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 ATP6V1C1P21283 382 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 CNR1P21554 472 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TBXA2RP21731 343 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 EVI2BP34910 448 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 GAS1P54826 345 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 PSMD4P55036 377 aaKnown RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 MXRA7P84157 204 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 CDK6Q00534 326 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 LIPEQ05469 1076 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 BNIP1Q12981 228 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 CYP51A1Q16850 503 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 FLYWCH1Q4VC44 716 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 AP1ARQ63HQ0 302 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 LRRC74BQ6ZQY2 392 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 MARCH3Q86UD3 253 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 HPS6Q86YV9 775 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 DEFB107AQ8IZN7 70 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 PGAM4Q8N0Y7 254 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms