RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 SNTA1Q13424 505 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 AGKQ53H12 422 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 BLOC1S3Q6QNY0 202 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 BNC2Q6ZN30 1099 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-226ENST00000553011 ZNF621Q6ZSS3 439 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 FGD2Q7Z6J4 655 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 CHERPQ8IWX8 916 aaKnown RBP12.9□□□□□ -0.34
PTCH1-226ENST00000553011 GHDCQ8N2G8 530 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 FAM109AQ8N4B1 249 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 NEURL3Q96EH8 262 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 TMEM41AQ96HV5 264 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 GNRHR2Q96P88 292 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 RTN4RQ9BZR6 473 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 ZNF385DQ9H6B1 395 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 GIN1Q9NXP7 522 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 WIF1Q9Y5W5 379 aa12.9□□□□□ -0.34
PTCH1-226ENST00000553011 DOPEY1Q5JWR5 2465 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 USP9YO00507 2555 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-226ENST00000553011 ICE1Q9Y2F5 2266 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 A0A1B0GTH9 108 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 RFXANKO14593 260 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 SNPHO15079 494 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 CAPN3P20807 821 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 GDF1P27539 372 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 CHI3L1P36222 383 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-226ENST00000553011 GAS1P54826 345 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 SRSF1Q07955 248 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTCH1-226ENST00000553011 LRRC74AQ0VAA2 488 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 RCAN2Q14206 197 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 GRAMD1BQ3KR37 738 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 GTDC1Q4AE62 458 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 DCST2Q5T1A1 773 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 TIGD3Q6B0B8 471 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 TNFAIP8L2Q6P589 184 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-226ENST00000553011 SLC2A7Q6PXP3 512 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 MSANTD1Q6ZTZ1 278 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 TRIML2Q8N7C3 387 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 WDSUB1Q8N9V3 476 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 OR1J4Q8NGS1 313 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 MIPOL1Q8TD10 442 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 RAB8BQ92930 207 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 SPDL1Q96EA4 605 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 ITCHQ96J02 903 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 OR51I1Q9H343 314 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 UBQLN3Q9H347 655 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 RMND5AQ9H871 391 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 SLC52A3Q9NQ40 469 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 PLSCR2Q9NRY7 297 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 B4GALT7Q9UBV7 327 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 ABCG2Q9UNQ0 655 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 TRIM33Q9UPN9 1127 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 C15orf41Q9Y2V0 281 aa12.89□□□□□ -0.35
PTCH1-226ENST00000553011 NPIPA5A0A0B4J1W7 369 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 B4DXG7 233 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 NPIPA7E9PJI5 369 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 NPIPA8P0DM63 369 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 OR12D1P0DN82 309 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 PTPN6P29350 595 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 IRX1P78414 480 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-226ENST00000553011 RBPJQ06330 500 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 STX5Q13190 355 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 SLC10A1Q14973 349 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTCH1-226ENST00000553011 C6orf10Q5SRN2 563 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 OR5M10Q6IEU7 315 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 APOOLQ6UXV4 268 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 TRILQ7L0X0 811 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 OLIG3Q7RTU3 272 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 MARCH3Q86UD3 253 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 RNF130Q86XS8 419 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 SPPL2CQ8IUH8 684 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 OR4C3Q8NH37 302 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 PNPT1Q8TCS8 783 aaKnown RBP12.88□□□□□ -0.35
PTCH1-226ENST00000553011 GTF2H4Q92759 462 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 AURKBQ96GD4 344 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-226ENST00000553011 SLC6A15Q9H2J7 730 aa12.88□□□□□ -0.35
PTCH1-226ENST00000553011 PHF3Q92576 2039 aaKnown RBP12.88□□□□□ -0.35
PTCH1-226ENST00000553011 ARHGAP21Q5T5U3 1957 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 DUXAA6NLW8 204 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 SLC19A2O60779 497 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 SEMA7AO75326 666 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 TRAPPC6AO75865 159 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 ANP32DO95626 131 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 OXSR1O95747 527 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-226ENST00000553011 IGHG3P01860 377 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 STSP08842 583 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 ABOP16442 354 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 ELAVL4P26378 380 aaKnown RBP12.87□□□□□ -0.35
PTCH1-226ENST00000553011 TRPC1P48995 793 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 KHKP50053 298 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 SEC24CP53992 1094 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 TOMM20Q15388 145 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 PAGE3Q5JUK9 113 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 COX20Q5RI15 118 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 C1QL3Q5VWW1 255 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 METTL21CQ5VZV1 264 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 PLCZ1Q86YW0 608 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 ZFP90Q8TF47 636 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 C10orf82Q8WW14 230 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 XAGE5Q8WWM1 108 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms