RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 GPR171O14626 319 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 AKAP8O43823 692 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 PRAMEF10O60809 474 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 KCNK5O95279 499 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ADH1CP00326 375 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CSF2P04141 144 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 EBLN1P0CF75 366 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SELLP14151 372 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 DRD1P21728 446 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 AZGP1P25311 298 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 SPAM1P38567 509 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 STARP49675 285 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 VEGFCP49767 419 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 WNT3AP56704 352 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CSTF1Q05048 431 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 SRSF11Q05519 484 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 ILKQ13418 452 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 RUNX3Q13761 415 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 BOP1Q14137 746 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 GPR176Q14439 515 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FGFBP1Q14512 234 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 OPCMLQ14982 345 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 DHCR24Q15392 516 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 HFEQ30201 348 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ZRANB3Q5FWF4 1079 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SLC22A10Q63ZE4 541 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 WASH2PQ6VEQ5 465 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 GCNT7Q6ZNI0 430 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CAMKMTQ7Z624 323 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 C12orf40Q86WS4 652 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CPOQ8IVL8 374 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 UMODL1-AS1Q8N2C9 162 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 OR11H4Q8NGC9 324 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 OR56B4Q8NH76 319 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ELP5Q8TE02 316 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FAM216AQ8WUB2 273 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ATF6BQ99941 703 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SEC22CQ9BRL7 303 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 RPP25Q9BUL9 199 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 DPCDQ9BVM2 203 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 ADAM19Q9H013 955 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CYSLTR2Q9NS75 346 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FBXL3Q9UKT7 428 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SLC6A5Q9Y345 797 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 PLSCR5A0PG75 271 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 TSPAN11A1L157 253 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 NAP1L6A6NFF2 107 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 D6RAR5 112 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 TEX46H3BTG2 121 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 K7EQS6 105 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 LDB2O43679 373 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 GSTZ1O43708 216 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 TSPAN8P19075 237 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 S100PP25815 95 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 S100A3P33764 101 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 ZNF81P51508 661 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 RAP2BP61225 183 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MRPS21P82921 87 aaKnown RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 C2orf80Q0P641 193 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 STX4Q12846 297 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PTGR1Q14914 329 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 DUOXA1Q1HG43 343 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MPPE1Q53F39 396 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM209BQ5JX69 171 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 ELFN2Q5R3F8 820 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PYHIN1Q6K0P9 492 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MTFR2Q6P444 385 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 C6orf15Q6UXA7 325 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 CD300LDQ6UXZ3 194 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 TMEM17Q86X19 198 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 SLITRK4Q8IW52 837 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CCDC36Q8IYA8 594 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MAML2Q8IZL2 1156 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 LINC00471Q8N535 108 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 EID2Q8N6I1 236 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 HJURPQ8NCD3 748 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 OR8J1Q8NGP2 316 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 OR5M3Q8NGP4 307 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 POC1BQ8TC44 478 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 EDEM1Q92611 657 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 EXT2Q93063 718 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 RFT1Q96AA3 541 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 HIST1H2AHQ96KK5 128 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MRGPRX3Q96LB0 322 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 INPP5KQ9BT40 448 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PRRG3Q9BZD7 231 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 POLE3Q9NRF9 147 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CPNE7Q9UBL6 633 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 KCND3Q9UK17 655 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FBXO4Q9UKT5 387 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 EXOSC1Q9Y3B2 195 aaKnown RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 HS3ST4Q9Y661 456 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PLXNB3Q9ULL4 1909 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 TRAPPC13A5PLN9 417 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM72CH0Y354 149 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 SUV39H1O43463 412 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 RAB36O95755 333 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 VIPP01282 170 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 HLA-DQB2P05538 268 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 SRPRAP08240 638 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms