RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 V9GYY5 206 aaPredicted RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 PLCE1Q9P212 2302 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 A0A1W2PPM1 405 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 OR2M5A3KFT3 312 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 GOLGA8RI6L899 631 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 LINC01387J3KSC0 135 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 CLDN9O95484 217 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 TP53P04637 393 aaPredicted RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 RBP1P09455 135 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 HK1P19367 917 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 HSD17B3P37058 310 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 MAPK12P53778 367 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 GALNT1Q10472 559 aaPredicted RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 EXOC3L2Q2M3D2 409 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 CHRFAM7AQ494W8 412 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 FRG2Q64ET8 278 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 METTL2BQ6P1Q9 378 aaKnown RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 WDR93Q6P2C0 686 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 LARP4Q71RC2 724 aaKnown RBP eCLIP11.49□□□□□ -0.57
USP28-212ENST00000544750 PAGE2Q7Z2X7 111 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 TDRPQ86YL5 185 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 OR4K17Q8NGC6 315 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 OR52B6Q8NGF0 335 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 OR6K3Q8NGY3 331 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 RAB3IL1Q8TBN0 382 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 EPS8L3Q8TE67 593 aaKnown RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 AENQ8WTP8 325 aaKnown RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 PHF21BQ96EK2 531 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 NSUN5Q96P11 429 aaKnown RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 FRG2BQ96QU4 278 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 MRPL57Q9BQC6 102 aaKnown RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 NTMT1Q9BV86 223 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 RTN4RQ9BZR6 473 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 OR10A4Q9H209 315 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 MRPL46Q9H2W6 279 aaKnown RBP11.49□□□□□ -0.57
USP28-212ENST00000544750 ZBTB26Q9HCK0 441 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 YAE1D1Q9NRH1 226 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 AHSPQ9NZD4 102 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 TMEM216Q9P0N5 145 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 TBK1Q9UHD2 729 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 PCTPQ9UKL6 214 aa11.49□□□□□ -0.57
USP28-212ENST00000544750 A0A096LNT2 108 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 A8MT66 165 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 STX16-NPEPL1H3BU86 382 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 STX16O14662 325 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 SEC14L5O43304 696 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 FADS1O60427 444 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 IGHV4-39P01824 125 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 RPS17P08708 135 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 FAM157CP0CG43 387 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 PYGBP11216 843 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 DEKP35659 375 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 ACVR1BP36896 505 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 SLC6A8P48029 635 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 ZNF844Q08AG5 666 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 TRAF3Q13114 568 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 GANABQ14697 944 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 RASA2Q15283 850 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP28-212ENST00000544750 TMEM44Q2T9K0 475 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 KRTAP24-1Q3LI83 254 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 LGSNQ5TDP6 509 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 RAET1LQ5VY80 246 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 DNAJC14Q6Y2X3 702 aaPredicted RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 RPS27LQ71UM5 84 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 COMMD6Q7Z4G1 85 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 GGNQ86UU5 652 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 OR4N2Q8NGD1 307 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 OR5M1Q8NGP8 315 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 ACMSDQ8TDX5 336 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 KLHL29Q96CT2 875 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 ERP27Q96DN0 273 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 ZBED6CLQ96FA7 236 aaPredicted RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 TRMT61AQ96FX7 289 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 NOL11Q9H8H0 719 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 MED11Q9P086 117 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 PPP4R1LQ9P1A2 415 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 EMCNQ9ULC0 261 aa11.48□□□□□ -0.57
USP28-212ENST00000544750 TNPO3Q9Y5L0 923 aaKnown RBP11.48□□□□□ -0.57
USP28-212ENST00000544750 A8MV72 311 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 H3BML4 177 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 SS18L1O75177 396 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 GUCY1B2O75343 617 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 BCAS2O75934 225 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 FCGR2AP12318 317 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 PSMB1P20618 241 aaKnown RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 IL12BP29460 328 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 EVI2BP34910 448 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 CDKN1AP38936 164 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 PSPHP78330 225 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 ERCC6LQ2NKX8 1250 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 GLYR1Q49A26 553 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 GGTA1PQ4G0N0 100 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 FAM219BQ5XKK7 198 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 WFDC8Q8IUA0 241 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 OR2W6PQ8NHA6 318 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 EFHD2Q96C19 240 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 GMPPAQ96IJ6 420 aaPredicted RBP11.47□□□□□ -0.57
USP28-212ENST00000544750 C1QTNF3Q9BXJ4 246 aa11.47□□□□□ -0.57
USP28-212ENST00000544750 ACTR6Q9GZN1 396 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms