RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SPPL2AQ8TCT8 520 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SLC38A5Q8WUX1 472 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 C5orf34Q96MH7 638 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 ZNF350Q9GZX5 532 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 TMEM38AQ9H6F2 299 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 POLE3Q9NRF9 147 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 SACM1LQ9NTJ5 587 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 B3GNT3Q9Y2A9 372 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 PCDHGB6Q9Y5F9 930 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 CPAMD8Q8IZJ3 1885 aa15.73■□□□□ 0.11
LIG1-204ENST00000542460 ANKRD33BA6NCL7 494 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 FCMRO60667 390 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 P04436 131 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 CCL3P10147 92 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 HPCAP84074 193 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 ZNF169Q14929 603 aaPredicted RBP15.72■□□□□ 0.11
LIG1-204ENST00000542460 CYP51A1Q16850 503 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 ZNF766Q5HY98 468 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 TMEM81Q6P7N7 255 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 C16orf89Q6UX73 402 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 LRRC74BQ6ZQY2 392 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 FBXW8Q8N3Y1 598 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 METTL25Q8N6Q8 603 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 ANKFN1Q8N957 763 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 TMEM178AQ8NBL3 297 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 FBXO27Q8NI29 283 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 SCMH1Q96GD3 660 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 NODALQ96S42 347 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 SPATA9Q9BWV2 254 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 HOXD1Q9GZZ0 328 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 UBQLN4Q9NRR5 601 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 CMTM6Q9NX76 183 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 CALML5Q9NZT1 146 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 WDR45Q9Y484 360 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 ATMQ13315 3056 aa15.72■□□□□ 0.11
LIG1-204ENST00000542460 SLC28A2O43868 658 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 NME2P1O60361 137 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 ICOSLGO75144 302 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 UTS2O95399 124 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 H6PDO95479 791 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 BCHEP06276 602 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 ARAFP10398 606 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 NME2P22392 152 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 CASP3P42574 277 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 SLC7A2P52569 658 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 CRISP3P54108 245 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 SLC25A3Q00325 362 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 RBBP4Q09028 425 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 SNTA1Q13424 505 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 MAPK11Q15759 364 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 ADRM1Q16186 407 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 ZNF630Q2M218 657 aaPredicted RBP15.71■□□□□ 0.11
LIG1-204ENST00000542460 FLYWCH1Q4VC44 716 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 TBCELQ5QJ74 424 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 NET1Q7Z628 596 aaPredicted RBP15.71■□□□□ 0.11
LIG1-204ENST00000542460 ZAR1Q86SH2 424 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 PGAM4Q8N0Y7 254 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 LSM14AQ8ND56 463 aaKnown RBP15.71■□□□□ 0.11
LIG1-204ENST00000542460 OR4C3Q8NH37 302 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 PMM1Q92871 262 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 MAL2Q969L2 176 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 MFRPQ9BY79 579 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 SAP130Q9H0E3 1048 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 METTL7AQ9H8H3 244 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 SPAG4Q9NPE6 437 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 KLHL1Q9NR64 748 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.71■□□□□ 0.11
LIG1-204ENST00000542460 CNOT11Q9UKZ1 510 aaKnown RBP15.71■□□□□ 0.11
LIG1-204ENST00000542460 MKLN1Q9UL63 735 aa15.71■□□□□ 0.11
LIG1-204ENST00000542460 KLF13Q9Y2Y9 288 aaPredicted RBP15.71■□□□□ 0.11
LIG1-204ENST00000542460 ATRXP46100 2492 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 C5orf58C9J3I9 102 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 NGFRP08138 427 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 CHRM4P08173 479 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 CNR1P21554 472 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 TBXA2RP21731 343 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 CLK3P49761 638 aaKnown RBP15.7■□□□□ 0.1
LIG1-204ENST00000542460 GZMMP51124 257 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 CDK6Q00534 326 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 GPR68Q15743 365 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 PRAMEF8Q5VWM4 474 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 PRAMEF7Q5VXH5 474 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 TYW3Q6IPR3 259 aaKnown RBP15.7■□□□□ 0.1
LIG1-204ENST00000542460 FRRS1Q6ZNA5 592 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 CALHM3Q86XJ0 350 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 PTOV1Q86YD1 416 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 TEX19Q8NA77 164 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 C11orf65Q8NCR3 313 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 RBM15BQ8NDT2 890 aaKnown RBP15.7■□□□□ 0.1
LIG1-204ENST00000542460 GRHL3Q8TE85 626 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 RNF138Q8WVD3 245 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 TMEM19Q96HH6 336 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 ZNF583Q96ND8 569 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 ANGPTL4Q9BY76 406 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 HES7Q9BYE0 225 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 C1orf21Q9H246 121 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 SLC38A1Q9H2H9 487 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 PIF1Q9H611 641 aa15.7■□□□□ 0.1
LIG1-204ENST00000542460 MTHFD2LQ9H903 347 aaPredicted RBP15.7■□□□□ 0.1
LIG1-204ENST00000542460 ABCD2Q9UBJ2 740 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms