RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZNF578Q96N58 590 aaPredicted RBP9.21□□□□□ -0.93
SS18-205ENST00000542420 SLC6A18Q96N87 628 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 SDF2Q99470 211 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 CENPOQ9BU64 300 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 MED18Q9BUE0 208 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 CCDC32Q9BV29 185 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 CDADC1Q9BWV3 514 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 SEMA6CQ9H3T2 930 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 AMBNQ9NP70 447 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 TRAPPC4Q9Y296 219 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 TMA7Q9Y2S6 64 aaKnown RBP9.21□□□□□ -0.93
SS18-205ENST00000542420 SPTY2D1-AS1A0A0U1RR47 76 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 A6NL46 340 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 FAM227AF5H4B4 570 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 H0YGG7 62 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 RFXAPO00287 272 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 DSCR3O14972 297 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 P2RX6O15547 441 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 CSO75390 466 aaKnown RBP9.21□□□□□ -0.94
SS18-205ENST00000542420 STX11O75558 287 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 UPK1BO75841 260 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 TPPPO94811 219 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 TGM1P22735 817 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 ARF3P61204 181 aaPredicted RBP9.21□□□□□ -0.94
SS18-205ENST00000542420 LSM3P62310 102 aaKnown RBP9.21□□□□□ -0.94
SS18-205ENST00000542420 MED22Q15528 200 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 TCEA2Q15560 299 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 SSX1Q16384 188 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 TSTQ16762 297 aaKnown RBP9.21□□□□□ -0.94
SS18-205ENST00000542420 AGAP7PQ5VUJ5 663 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 SIGIRRQ6IA17 410 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 GRAMD2AQ8IUY3 354 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 OR52I1Q8NGK6 324 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 SLC41A3Q96GZ6 507 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 HS6ST2Q96MM7 605 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 WDFY2Q96P53 400 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 MCHR1Q99705 422 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 WFDC6Q9BQY6 131 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 ZBTB20Q9HC78 741 aaPredicted RBP9.21□□□□□ -0.94
SS18-205ENST00000542420 HHATLQ9HCP6 504 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 ENAMQ9NRM1 1142 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 SEMA4GQ9NTN9 838 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 CLDND1Q9NY35 253 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 CD207Q9UJ71 328 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 POMT2Q9UKY4 750 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 CHST2Q9Y4C5 530 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 KCNE3Q9Y6H6 103 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 CDH10Q9Y6N8 788 aa9.21□□□□□ -0.94
SS18-205ENST00000542420 SLC35F4A4IF30 521 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 TRAPPC13A5PLN9 417 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 OR5K3A6NET4 321 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 ZNF670-ZNF695F2Z2N8 137 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 CYR61O00622 381 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 PRKYO43930 277 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 SRPX2O60687 465 aaPredicted RBP9.2□□□□□ -0.94
SS18-205ENST00000542420 NKX2-2O95096 273 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 SOX14O95416 240 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 IGHV4-34P06331 123 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 SLC35E2P0CK97 266 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 C8orf89P0DMQ9 161 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 NID1P14543 1247 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 MYL12AP19105 171 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 POLR2CP19387 275 aaPredicted RBP9.2□□□□□ -0.94
SS18-205ENST00000542420 TNNI3P19429 210 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 GALNSP34059 522 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 GRK5P34947 590 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 PDX1P52945 283 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 GAS1P54826 345 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 WNT4P56705 351 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 DLX2Q07687 328 aaPredicted RBP9.2□□□□□ -0.94
SS18-205ENST00000542420 MAP4K2Q12851 820 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 TPBGQ13641 420 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 SNAPC1Q16533 368 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 PRICKLE4Q2TBC4 344 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 ZNF750Q32MQ0 723 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 FAM111BQ6SJ93 734 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 ZNF836Q6ZNA1 936 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 PLEKHG7Q6ZR37 379 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 VRK2Q86Y07 508 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 KIF18BQ86Y91 864 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 CA13Q8N1Q1 262 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 POGLUT1Q8NBL1 392 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 HPS1Q92902 700 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 LRFN5Q96NI6 719 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 OR5M11Q96RB7 305 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 IL4I1Q96RQ9 567 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 MACROD1Q9BQ69 325 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 LMF2Q9BU23 707 aaKnown RBP9.2□□□□□ -0.94
SS18-205ENST00000542420 OR51E2Q9H255 320 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 SLC2A4RGQ9NR83 387 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 TVP23BQ9NYZ1 205 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 DNAJC27Q9NZQ0 273 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 DAPK2Q9UIK4 370 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 BAIAP2Q9UQB8 552 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 EXOGQ9Y2C4 368 aaKnown RBP9.2□□□□□ -0.94
SS18-205ENST00000542420 IQCMA0A1B0GVH7 501 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 H0Y8X5 98 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 IL1AP01583 271 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 BMP8BP34820 402 aa9.2□□□□□ -0.94
SS18-205ENST00000542420 IGLV3-21P80748 117 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms