RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	PLD2	O14939	933 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	POLR1C	O15160	346 aa	Predicted RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	TBX19	O60806	448 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC2A10	O95528	541 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	LGI1	O95970	557 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	THY1	P04216	161 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	DRD2	P14416	443 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	CSNK2A2	P19784	350 aa	Predicted RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	GIPR	P48546	466 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	TAB1	Q15750	504 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SYT14P1	Q58G82	188 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	C12orf73	Q69YU5	71 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC30A6	Q6NXT4	461 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SYT14	Q8NB59	555 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC35A4	Q96G79	324 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	POLR2J2	Q9GZM3	115 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	MTIF3	Q9H2K0	278 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	NT5DC2	Q9H857	520 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ATP13A2	Q9NQ11	1180 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ACAD8	Q9UKU7	415 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	OR6C70	A6NIJ9	312 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	HCRTR1	O43613	425 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ZNF780A	O75290	641 aa	Predicted RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	NTSR1	P30989	418 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	RPS5	P46782	204 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	CAV3	P56539	151 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	DAB2	P98082	770 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	INSL4	Q14641	139 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SPHAR	Q15513	63 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	TRMT12	Q53H54	448 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ATAT1	Q5SQI0	421 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	FBXO42	Q6P3S6	717 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ZC3H14	Q6PJT7	736 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	NACC2	Q96BF6	587 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ZNF681	Q96N22	645 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	OR2M4	Q96R27	311 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	ADAM29	Q9UKF5	820 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	CFL2	Q9Y281	166 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC9A8	Q9Y2E8	581 aa		13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	LSM2	Q9Y333	95 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-209	ENST00000542286	PRR19	A6NJB7	356 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286		B8ZZF3	427 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	POU2F2	P09086	479 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	FBXO43	Q4G163	708 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	ZNF367	Q7RTV3	350 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	C16orf62	Q7Z3J2	963 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	SLC30A8	Q8IWU4	369 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	TRIM48	Q8IWZ4	208 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	LSMEM1	Q8N8F7	131 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	KLHL6	Q8WZ60	621 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	SIPA1	Q96FS4	1042 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	RBCK1	Q9BYM8	510 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	SRMS	Q9H3Y6	488 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	FAM170B	A6NMN3	283 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	FH	P07954	510 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	GKN3P	P0CG01	181 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	PRG2	P13727	222 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	GNS	P15586	552 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	CMPK1	P30085	196 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	SOX18	P35713	384 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	RUNX2	Q13950	521 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	ZNF425	Q6IV72	752 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	FAM92B	Q6ZTR7	304 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	MTSS1L	Q765P7	747 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	TMEM52	Q8NDY8	209 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	BBS1	Q8NFJ9	593 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	OR52I1	Q8NGK6	324 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	UBASH3B	Q8TF42	649 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	TMEM255B	Q8WV15	326 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	GATAD2B	Q8WXI9	593 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	TMEM80	Q96HE8	168 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	BMF	Q96LC9	184 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	ASPN	Q9BXN1	380 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	TIGAR	Q9NQ88	270 aa		13.81	□□□□□ -0.2
DDX55-209	ENST00000542286	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286		A0A1W2PRQ8	180 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	OR2W5	A6NFC9	320 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	FAM183A	A6NL82	134 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286		A8MVJ9	347 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	LSS	P48449	732 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	GPR68	Q15743	365 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	TMEM35A	Q53FP2	167 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	GLRX5	Q86SX6	157 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	LHFPL3	Q86UP9	236 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	OR9Q1	Q8NGQ5	310 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	GIMAP5	Q96F15	307 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	ZNF582	Q96NG8	517 aa	Predicted RBP	13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	TM9SF2	Q99805	663 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	TAPBPL	Q9BX59	468 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	ADAP2	Q9NPF8	381 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	KLK4	Q9Y5K2	254 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	SLCO1B1	Q9Y6L6	691 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286		A0A1W2PQ09	198 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	ZC3H12D	A2A288	527 aa	Known RBP	13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	OR6C74	A6NCV1	312 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	IFI30	P13284	250 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	NUDT1	P36639	197 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	GSTM5	P46439	218 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	TGM3	Q08188	693 aa		13.8	□□□□□ -0.2
DDX55-209	ENST00000542286	FAP	Q12884	760 aa		13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms