RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 UTP11Q9Y3A2 253 aaKnown RBP6.55□□□□□ -1.36
YBX3-209ENST00000540747 PCNX3Q9H6A9 2034 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 FAM187AA6NFU0 413 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 RNF223E7ERA6 249 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 STX16-NPEPL1H3BU86 382 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 PPP6CO00743 305 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 STX16O14662 325 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 TLX2O43763 284 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 SS18L1O75177 396 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 GUCY1B2O75343 617 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 BCAS2O75934 225 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 F12P00748 615 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 SOD3P08294 240 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 FAM153BP0C7A2 387 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 FCGR2AP12318 317 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 HK1P19367 917 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 PSMB1P20618 241 aaKnown RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 TCEA1P23193 301 aaKnown RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 EEFSECP57772 596 aaKnown RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 GNGT1P63211 74 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 CLEC12BQ2HXU8 276 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 CTU2Q2VPK5 515 aaKnown RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 FAM153CQ494X1 144 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 GLYR1Q49A26 553 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 HMBOX1Q6NT76 420 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 LETMD1Q6P1Q0 360 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 ZDHHC24Q6UX98 284 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 DNAJC14Q6Y2X3 702 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 CTAGE3PQ8IX95 158 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 UBQLNLQ8IYU4 475 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 PLD6Q8N2A8 252 aaKnown RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 MAPK1IP1LQ8NDC0 245 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 OR7G2Q8NG99 324 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 OR4F6Q8NGB9 312 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 OR4K17Q8NGC6 315 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 OR9A2Q8NGT5 310 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 OR6K3Q8NGY3 331 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 FBF1Q8TES7 1133 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 ARL8AQ96BM9 186 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 EFHD2Q96C19 240 aaPredicted RBP6.54□□□□□ -1.36
YBX3-209ENST00000540747 C1GALT1C1Q96EU7 318 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 PLPPR2Q96GM1 343 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 C1QTNF3Q9BXJ4 246 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 REG4Q9BYZ8 158 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 RAB17Q9H0T7 212 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 BRF2Q9HAW0 419 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 PRM3Q9NNZ6 103 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 AHSPQ9NZD4 102 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 ABCG2Q9UNQ0 655 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 AP4B1Q9Y6B7 739 aa6.54□□□□□ -1.36
YBX3-209ENST00000540747 TENM1Q9UKZ4 2725 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 A0A096LPK6 155 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 ESYT3A0FGR9 886 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 HMGB1P1B2RPK0 211 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 EBAG9O00559 213 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 ADAMDEC1O15204 470 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SEC14L5O43304 696 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SCO2O43819 266 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SHOX2O60902 331 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 GCM2O75603 506 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 PDYNP01213 254 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 IGHV4-39P01824 125 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SBK3P0C264 359 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 MYZAPP0CAP1 466 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 PSMA4P25789 261 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 IL12BP29460 328 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 STX2P32856 288 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 KCNJ5P48544 419 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 CCNG1P51959 295 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 RPS4XP62701 263 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 RAE1P78406 368 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 MRPS22P82650 360 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 IFT88Q13099 833 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 PRSS53Q2L4Q9 553 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 CEP85LQ5SZL2 805 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 MROH9Q5TGP6 573 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 RAET1LQ5VY80 246 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 PODNL1Q6PEZ8 512 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 APOOLQ6UXV4 268 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 RPS27LQ71UM5 84 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 CHMP1BQ7LBR1 199 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SLC44A2Q8IWA5 706 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 CCDC116Q8IYX3 515 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 TMEM151AQ8N4L1 468 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 C1orf52Q8N6N3 182 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 OR5M1Q8NGP8 315 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 RAB3IL1Q8TBN0 382 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 ZNF483Q8TF39 744 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 AKAP1Q92667 903 aaKnown RBP eCLIP6.53□□□□□ -1.36
YBX3-209ENST00000540747 HOXB13Q92826 284 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 KAT2AQ92830 837 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 GMPPAQ96IJ6 420 aaPredicted RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 FAIM2Q9BWQ8 316 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 KLHL4Q9C0H6 718 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 ACTR6Q9GZN1 396 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 DPH5Q9H2P9 285 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SLCO5A1Q9H2Y9 848 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 CENPHQ9H3R5 247 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 FAM120CQ9NX05 1096 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 MED11Q9P086 117 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms