RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 FBXW2Q9UKT8 454 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 ZFR2Q9UPR6 939 aaKnown RBP11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 ATG4BQ9Y4P1 393 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 SNRNP200O75643 2136 aaKnown RBP11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 A0A0A6YYJ9 748 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 A0A0B4J203 849 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 A0A1W2PR48 441 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 FAAHO00519 579 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC30A4O14863 429 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 NARSO43776 548 aaKnown RBP11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 HRGP04196 525 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 C8orf89P0DMQ9 161 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 NR2F6P10588 404 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 CXCL3P19876 107 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 FCARP24071 287 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 SOX9P48436 509 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 TMEM201Q5SNT2 666 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 FAM46CQ5VWP2 391 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 TANGO2Q6ICL3 276 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 ESPNLQ6ZVH7 1005 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 GLRX5Q86SX6 157 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 KLBQ86Z14 1044 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 OR8K5Q8NH50 307 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 NEIL3Q8TAT5 605 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 PIGKQ92643 395 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 FGF11Q92914 225 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 EQTNQ9NQ60 294 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 RBFOX1Q9NWB1 397 aaKnown RBP11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 TAS2R7Q9NYW3 318 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 THAP10Q9P2Z0 257 aaPredicted RBP11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 EXTL2Q9UBQ6 330 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 MGAT4BQ9UQ53 548 aa11.77□□□□□ -0.53
SFSWAP-208ENST00000539506 C2orf16Q68DN1 1984 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 MAN2B1O00754 1011 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 NUPL2O15504 423 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 MPZL2O60487 215 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 RAB36O95755 333 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC35G4P0C7Q5 338 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ATXN8OSP0DMR3 200 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ELK1P19419 428 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 CPN2P22792 545 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 NCBP2P52298 156 aaKnown RBP eCLIP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 STXBP1P61764 594 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 PRDX1Q06830 199 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 IRF4Q15306 451 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 DGLUCYQ7Z3D6 616 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 IQCF2Q8IXL9 164 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 FBXL6Q8N531 539 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 GDPD1Q8N9F7 314 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 OR11H4Q8NGC9 324 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 SMARCD2Q92925 531 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 CNRIP1Q96F85 164 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 FNDC11Q9BVV2 318 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC35C2Q9NQQ7 365 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ACSS1Q9NUB1 689 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ZCCHC3Q9NUD5 404 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 IMP3Q9NV31 184 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 CSNK1G3Q9Y6M4 447 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 TSPAN4O14817 238 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 EEF1E1O43324 174 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 TFPIP10646 304 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 WNT4P56705 351 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 OR10A3P58181 314 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 RRAS2P62070 204 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 RPL6Q02878 288 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ZSWIM7Q19AV6 140 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ZNF628Q5EBL2 1059 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 C18orf63Q68DL7 685 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 KIF18BQ86Y91 864 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 MORN4Q8NDC4 146 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ZNF431Q8TF32 576 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 CAMK1GQ96NX5 476 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 GON7Q9BXV9 100 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 NT5DC2Q9H857 520 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 MED20Q9H944 212 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ISG20L2Q9H9L3 353 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC28A3Q9HAS3 691 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC6A20Q9NP91 592 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 NUDT15Q9NV35 164 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 ZNF224Q9NZL3 707 aa11.76□□□□□ -0.53
SFSWAP-208ENST00000539506 GRXCR1A8MXD5 290 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 C1QTNF3-AMACRE9PGA6 284 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 IL1AP01583 271 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 NR2F1P10589 423 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 FUT1P19526 365 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 PEBP1P30086 187 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 SSR2P43308 183 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC16A1P53985 500 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 EFNB1P98172 346 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 MLC1Q15049 377 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 SMARCD3Q6STE5 483 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 NR2C2APQ86WQ0 139 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 CCDC116Q8IYX3 515 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 LRRC20Q8TCA0 184 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 HMGB4Q8WW32 186 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 FAM46AQ96IP4 442 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 MSLNLQ96KJ4 702 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC35G5Q96KT7 338 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 ZFP3Q96NJ6 502 aa11.75□□□□□ -0.53
SFSWAP-208ENST00000539506 ZNF607Q96SK3 696 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms