RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 OR6C4Q8NGE1 309 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 HUS1BQ8NHY5 278 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 LMO3Q8TAP4 145 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 TRIB2Q92519 343 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 LMF1Q96S06 567 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 TSPAN10Q9H1Z9 355 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-209ENST00000537178 SDHAF2Q9NX18 166 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 C17orf113A0A1B0GUU1 675 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 EIF3FO00303 357 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-209ENST00000537178 RNGTTO60942 597 aaKnown RBP10.09□□□□□ -0.79
CLIP1-209ENST00000537178 ZNF254O75437 659 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 SERPINA5P05154 406 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 CRABP1P29762 137 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 CHRNB4P30926 498 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 PRPS1P60891 318 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 HTD2P86397 168 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 LMAN2Q12907 356 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 KIAA1211LQ6NV74 962 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 DNAJC22Q8N4W6 341 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 OR9K2Q8NGE7 335 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 OR13J1Q8NGT2 312 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 ZNF417Q8TAU3 575 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 SFXN5Q8TD22 340 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 ELMOD3Q96FG2 381 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 ARL5BQ96KC2 179 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 MRGPRX2Q96LB1 330 aa10.09□□□□□ -0.79
CLIP1-209ENST00000537178 DPH2Q9BQC3 489 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-209ENST00000537178 APOBEC3BQ9UH17 382 aaKnown RBP10.09□□□□□ -0.79
CLIP1-209ENST00000537178 LSM5Q9Y4Y9 91 aaKnown RBP10.09□□□□□ -0.79
CLIP1-209ENST00000537178 BTAF1O14981 1849 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 C2orf72A6NCS6 295 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 KNG1P01042 644 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 HBQ1P09105 142 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SLC35E2BP0CK96 405 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 RPS26P62854 115 aaKnown RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 NFATC3Q12968 1075 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 COMMD7Q86VX2 200 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 NRMQ8IXM6 262 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 OR1S1Q8NH92 325 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 CREB3L4Q8TEY5 395 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ZDHHC1Q8WTX9 485 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 TMEM174Q8WUU8 243 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 DEDD2Q8WXF8 326 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 IGSF21Q96ID5 467 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 IL17FQ96PD4 163 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 KCNK12Q9HB15 430 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ASF1BQ9NVP2 202 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SMOXQ9NWM0 555 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 GPR83Q9NYM4 423 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SIX4Q9UIU6 781 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SLC45A1Q9Y2W3 748 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ATG4BQ9Y4P1 393 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 OR1A2Q9Y585 309 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 B3GALT1Q9Y5Z6 326 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 CNTRLQ7Z7A1 2325 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 PIRO00625 290 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 MRPS14O60783 128 aaKnown RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 F2P00734 622 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 HNRNPA1P09651 372 aaKnown RBP eCLIP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 GGT1P19440 569 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 CNR2P34972 360 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ZNF33BQ06732 778 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 PCGF3Q3KNV8 242 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 AHDC1Q5TGY3 1603 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 EEF1A1P5Q5VTE0 462 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 BEST4Q8NFU0 473 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SLC7A13Q8TCU3 470 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 BRI3BPQ8WY22 251 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 A0A1W2PQL4 384 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 F5H5P2 479 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 GOSR2O14653 212 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ARPC5O15511 151 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 LATO43561 262 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ETFAP13804 333 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 C1orf61Q13536 156 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SF3B4Q15427 424 aaKnown RBP eCLIP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 NSDHLQ15738 373 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 C14orf28Q4W4Y0 310 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 FAM69BQ5VUD6 431 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 FAM83HQ6ZRV2 1179 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 GPR148Q8TDV2 347 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 DCUN1D4Q92564 292 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 DNAJA3Q96EY1 480 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ACTRT3Q9BYD9 372 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 SMG9Q9H0W8 520 aaKnown RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 B3GNT2Q9NY97 397 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 ADAMTS6Q9UKP5 1117 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 E7ESA3 106 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 FAM227AF5H4B4 570 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 PRAMEF2O60811 474 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 MPIG6BO95866 241 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 LCATP04180 440 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 C6P13671 934 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 UGT2B7P16662 529 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 CX3CR1P49238 355 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 RRAS2P62070 204 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-209ENST00000537178 TAP2Q03519 686 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 MANEALQ5VSG8 457 aa10.08□□□□□ -0.8
CLIP1-209ENST00000537178 TMEM135Q86UB9 458 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms