RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 PRB2P02812 416 aaPredicted RBP3.41□□□□□ -1.86
PRKDC-205ENST00000535375 ASMTP46597 345 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 CCL11P51671 97 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 UCNP55089 124 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 CKAP4Q07065 602 aaKnown RBP3.41□□□□□ -1.86
PRKDC-205ENST00000535375 CARTPTQ16568 116 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 OR6B2Q6IFH4 312 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 IGFL2Q6UWQ7 119 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 TGIF2LYQ8IUE0 185 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 RNF138Q8WVD3 245 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 TAF4BQ92750 862 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 MARC2Q969Z3 335 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 DHTKD1Q96HY7 919 aaPredicted RBP3.41□□□□□ -1.86
PRKDC-205ENST00000535375 FTHL17Q9BXU8 183 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 NACA2Q9H009 215 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 SIRPDQ9H106 197 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 ARHGAP23Q9P227 1491 aa3.41□□□□□ -1.86
PRKDC-205ENST00000535375 RGSL1A5PLK6 1076 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 TRIM49D1C9J1S8 452 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 PROS1P07225 676 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 HOXC4P09017 264 aaPredicted RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 DNAJB1P25685 340 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 PTBP1P26599 531 aaKnown RBP eCLIP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 NF2P35240 595 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 STK19P49842 368 aaPredicted RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 RAB35Q15286 201 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 ZKSCAN8Q15776 578 aaPredicted RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 INAQ16352 499 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 CCDC40Q4G0X9 1142 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 SBK1Q52WX2 424 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 DNAJC21Q5F1R6 531 aaKnown RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 BEND6Q5SZJ8 279 aaPredicted RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 TIFABQ6ZNK6 161 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 TMEM179BQ7Z7N9 219 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 MINDY2Q8NBR6 621 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 TSGA13Q96PP4 275 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 CARD6Q9BX69 1037 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 ATG10Q9H0Y0 220 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 HOMER3Q9NSC5 361 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 DCAF13Q9NV06 445 aaKnown RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 SOHLH2Q9NX45 425 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 ISY1Q9ULR0 285 aaKnown RBP3.4□□□□□ -1.87
PRKDC-205ENST00000535375 GRIN2DO15399 1336 aa3.4□□□□□ -1.87
PRKDC-205ENST00000535375 USP6P35125 1406 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 TMEM89A2RUT3 159 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 PINLYPA6NC86 204 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 SSX5O60225 188 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 PTBP3O95758 552 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 IGHV3-23P01764 117 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 PTMAP06454 111 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 GNSP15586 552 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 FUT1P19526 365 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 CCND2P30279 289 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 AKT2P31751 481 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 RPL32P62910 135 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 BCL2L1Q07817 233 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 PSG7Q13046 419 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 PRR4Q16378 134 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 ZNF528Q3MIS6 628 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 DMKNQ6E0U4 476 aaPredicted RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 OLFM4Q6UX06 510 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 SYVN1Q86TM6 617 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 YRDCQ86U90 279 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 ERI1Q8IV48 349 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 C9orf40Q8IXQ3 194 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 RNF148Q8N7C7 305 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 ANKRD20A12PQ8NF67 263 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 OR56B1Q8NGI3 324 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 VPS39Q96JC1 886 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 COQ7Q99807 217 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 CBWD1Q9BRT8 395 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 TM2D1Q9BX74 207 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 LIN28AQ9H9Z2 209 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 FAM114A2Q9NRY5 505 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 STARD5Q9NSY2 213 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 CNOT2Q9NZN8 540 aaKnown RBP3.39□□□□□ -1.87
PRKDC-205ENST00000535375 FZR1Q9UM11 496 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 NUDCQ9Y266 331 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 ZMYM6O95789 1325 aa3.39□□□□□ -1.87
PRKDC-205ENST00000535375 TMEM110-MUSTN1A8MSY1 372 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 IGKV3-11P04433 115 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 IGFBP1P08833 259 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-205ENST00000535375 NR2C1P13056 603 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 ARF4P18085 180 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-205ENST00000535375 RFC2P35250 354 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 SRYQ05066 204 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 FUT7Q11130 342 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 ORC2Q13416 577 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-205ENST00000535375 DPYSQ14117 519 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 ZSWIM7Q19AV6 140 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 FAM159AQ6UWV7 190 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 ISLR2Q6UXK2 745 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 UNC5DQ6UXZ4 953 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 FAM43BQ6ZT52 329 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-205ENST00000535375 TMEM110Q86TL2 294 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 PARGQ86W56 976 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 FAM71CQ8NEG0 241 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 PHYHIPQ92561 330 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 TADA1Q96BN2 335 aa3.38□□□□□ -1.87
PRKDC-205ENST00000535375 CCSER1Q9C0I3 900 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms