RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CASP6P55212 293 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 PER3P56645 1201 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ADORA2A-AS1P86434 159 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 TP53BP2Q13625 1128 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 MTFR2Q6P444 385 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 SZRD1Q7Z422 152 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 C6orf120Q7Z4R8 191 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ANKRD46Q86W74 232 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 CLEC4FQ8N1N0 589 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 MARVELD2Q8N4S9 558 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 FADS6Q8N9I5 356 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 VPS37AQ8NEZ2 397 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 OR5AK3PQ8NH89 298 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 FBXO30Q8TB52 745 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 PHF10Q8WUB8 498 aaKnown RBP11.82□□□□□ -0.52
VPS28-216ENST00000533806 DYDC1Q8WWB3 177 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ITLN2Q8WWU7 325 aaPredicted RBP11.82□□□□□ -0.52
VPS28-216ENST00000533806 OTUB1Q96FW1 271 aaPredicted RBP11.82□□□□□ -0.52
VPS28-216ENST00000533806 MARK4Q96L34 752 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 VKORC1Q9BQB6 163 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 CCDC28BQ9BUN5 200 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 BTBD2Q9BX70 525 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 SLC6A15Q9H2J7 730 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ACBD3Q9H3P7 528 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 TCF7L2Q9NQB0 619 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 SERHLQ9NQF3 203 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 PNPLA3Q9NST1 481 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 ZIM2Q9NZV7 527 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 TNFRSF10DQ9UBN6 386 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 FBXL2Q9UKC9 423 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 MRPS18CQ9Y3D5 142 aaKnown RBP11.82□□□□□ -0.52
VPS28-216ENST00000533806 PCDHGB3Q9Y5G1 929 aa11.82□□□□□ -0.52
VPS28-216ENST00000533806 UNC79Q9P2D8 2635 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 IGLV3-32A0A0A0MS00 114 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 ALG1L2C9J202 215 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 NPIPA2E9PIF3 369 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 NPIPA3F8WFD2 350 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 CFLARO15519 480 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 ATP8B1O43520 1251 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 EDF1O60869 148 aaKnown RBP11.81□□□□□ -0.52
VPS28-216ENST00000533806 C1QCP02747 245 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 IL6P05231 212 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 TPOP07202 933 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 UQCRC2P22695 453 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 TRPC1P48995 793 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 AQP5P55064 265 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 POU6F2P78424 691 aaPredicted RBP11.81□□□□□ -0.52
VPS28-216ENST00000533806 CRYZQ08257 329 aaKnown RBP11.81□□□□□ -0.52
VPS28-216ENST00000533806 GRAMD1BQ3KR37 738 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 SPDYE7PQ495Y7 208 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 EIPR1Q53HC9 387 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 SAXO2Q658L1 398 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 VASNQ6EMK4 673 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 RTL6Q6ICC9 239 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 OR5M10Q6IEU7 315 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 BHLHB9Q6PI77 547 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 FIGNL1Q6PIW4 674 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 C3P1Q6ZMU1 363 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 MARCH3Q86UD3 253 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 CD163Q86VB7 1156 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 CHDHQ8NE62 594 aaPredicted RBP11.81□□□□□ -0.52
VPS28-216ENST00000533806 FAM83FQ8NEG4 500 aaPredicted RBP11.81□□□□□ -0.52
VPS28-216ENST00000533806 OR4A15Q8NGL6 344 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 CDS1Q92903 461 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 NEURL3Q96EH8 262 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 TIMP4Q99727 224 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 OR2B2Q9GZK3 357 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 SLC52A3Q9NQ40 469 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 SH3BGRL2Q9UJC5 107 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 FAF1Q9UNN5 650 aaPredicted RBP11.81□□□□□ -0.52
VPS28-216ENST00000533806 NINQ8N4C6 2090 aa11.81□□□□□ -0.52
VPS28-216ENST00000533806 CENPEQ02224 2701 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 RNF103-CHMP3A0A140T963 221 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 NPIPB9F8W1W9 429 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 TRAPPC6AO75865 159 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 OXSR1O95747 527 aaPredicted RBP11.8□□□□□ -0.52
VPS28-216ENST00000533806 KRT16P08779 473 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 AGAP20933 346 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 CDKN2CP42773 168 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 GFRA1P56159 465 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 RPS26P62854 115 aaKnown RBP11.8□□□□□ -0.52
VPS28-216ENST00000533806 LRRC74AQ0VAA2 488 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 WIPI1Q5MNZ9 446 aaPredicted RBP11.8□□□□□ -0.52
VPS28-216ENST00000533806 CCNJQ5T5M9 372 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 HEPHL1Q6MZM0 1159 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 RPTNQ6XPR3 784 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 NCCRP1Q6ZVX7 275 aaPredicted RBP11.8□□□□□ -0.52
VPS28-216ENST00000533806 ACAD11Q709F0 780 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 GALNT10Q86SR1 603 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 FUNDC1Q8IVP5 155 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 RPRMLQ8N4K4 120 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 COX18Q8N8Q8 333 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 OR2M3Q8NG83 312 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 OR9I1Q8NGQ6 314 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 ADAMTS15Q8TE58 950 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 DUSP19Q8WTR2 217 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 SARAFQ96BY9 339 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 OR7D2Q96RA2 312 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 OR52E6Q96RD3 313 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 INPP5KQ9BT40 448 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms