RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	NT5C3B	Q969T7	300 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	MYLPF	Q96A32	169 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ISG20	Q96AZ6	181 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	L3HYPDH	Q96EM0	354 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SCMH1	Q96GD3	660 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SENP5	Q96HI0	755 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	UBXN10	Q96LJ8	280 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	TAAR6	Q96RI8	345 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	HBEGF	Q99075	208 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	P2RY13	Q9BPV8	354 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	KCTD14	Q9BQ13	255 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	WDR83	Q9BRX9	315 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	C1QTNF1	Q9BXJ1	281 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ROGDI	Q9GZN7	287 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	LRRN3	Q9H3W5	708 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	DDX31	Q9H8H2	851 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	PRMT8	Q9NR22	394 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	POT1	Q9NUX5	634 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	TAS2R9	Q9NYW1	312 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	VAPA	Q9P0L0	249 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	UBQLN2	Q9UHD9	624 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	KCNJ14	Q9UNX9	436 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GOLT1B	Q9Y3E0	138 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	PKP3	Q9Y446	797 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	PCDHGB5	Q9Y5G0	923 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	PTPRF	P10586	1907 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	LAMB4	A4D0S4	1761 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	MYO5A	Q9Y4I1	1855 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	MYH9	P35579	1960 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CRB1	P82279	1406 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SIPA1L1	O43166	1804 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110		A0A1B0GV90	55 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	C5orf52	A6NGY3	159 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110		H0YAE9	185 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PAPSS1	O43252	624 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PSTPIP1	O43586	416 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	RHBDL1	O75783	438 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	POP7	O75817	140 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SRP72	O76094	671 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SORBS2	O94875	1100 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	NXPH2	O95156	264 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	DIRAS3	O95661	229 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	LALBA	P00709	142 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	RAF1	P04049	648 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	KLK3	P07288	261 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CYC1	P08574	325 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	FGF2	P09038	288 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	MMP10	P09238	476 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CLTB	P09497	229 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	TRIM49	P0CI25	452 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	TRIM49C	P0CI26	452 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF250	P15622	560 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	AHCY	P23526	432 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CNTF	P26441	200 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	FOXN2	P32314	431 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	MAGEA4	P43358	317 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	IDH3G	P51553	393 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CCR4	P51679	360 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ATXN3	P54252	364 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CDH13	P55290	713 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	RPS20	P60866	119 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PKIA	P61925	76 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	HERVK_113	P63132	956 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CSNK1G2	P78368	415 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SPOCK1	Q08629	439 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PRKAA1	Q13131	559 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ORC2	Q13416	577 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	P2RY14	Q15391	338 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SHB	Q15464	509 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	GOLGA7B	Q2TAP0	167 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	RBM48	Q5RL73	367 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	MANEA	Q5SRI9	462 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PRAMEF20	Q5VT98	475 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	LPCAT4	Q643R3	524 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PLA2G4F	Q68DD2	849 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	REP15	Q6BDI9	236 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	C1orf94	Q6P1W5	598 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	PRSS57	Q6UWY2	283 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	DLK2	Q6UY11	383 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF517	Q6ZMY9	492 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SHF	Q7M4L6	423 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	TRMT11	Q7Z4G4	463 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SYVN1	Q86TM6	617 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CATSPER3	Q86XQ3	398 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ZBTB8OS	Q8IWT0	167 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	GHDC	Q8N2G8	530 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	SFRP1	Q8N474	314 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	OR4M1	Q8NGD0	313 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	LKAAEAR1	Q8TD35	194 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	TSEN15	Q8WW01	171 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	TCTEX1D2	Q8WW35	142 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	C1orf54	Q8WWF1	131 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	THRSP	Q92748	146 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	OTULIN	Q96BN8	352 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	CCDC124	Q96CT7	223 aa	Known RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ALG14	Q96F25	216 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	WBP1	Q96G27	269 aa		5.23	□□□□□ -1.57
CD44-231	ENST00000531110	OXNAD1	Q96HP4	312 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF514	Q96K75	400 aa	Predicted RBP	5.23	□□□□□ -1.57

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