RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SPDYAQ5MJ70 313 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 SH2D4BQ5SQS7 431 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 TRIM46Q7Z4K8 759 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 BTLAQ7Z6A9 289 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 LRRC75A-AS1Q8N1F1 130 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 FIG4Q92562 907 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 C1GALT1C1Q96EU7 318 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 PGM2Q96G03 612 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 AMDHD1Q96NU7 426 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 FAM111AQ96PZ2 611 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 PIGQQ9BRB3 760 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 LMF2Q9BU23 707 aaKnown RBP10.23□□□□□ -0.77
VPS28-214ENST00000531032 PINK1Q9BXM7 581 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 OPN3Q9H1Y3 402 aaPredicted RBP10.23□□□□□ -0.77
VPS28-214ENST00000531032 GLIPR2Q9H4G4 154 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 PTGES2Q9H7Z7 377 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 Q9N2J8 555 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 MID1IP1Q9NPA3 183 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 MIEF1Q9NQG6 463 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 DDX18Q9NVP1 670 aaKnown RBP10.23□□□□□ -0.77
VPS28-214ENST00000531032 KLHL28Q9NXS3 571 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 ELOVL5Q9NYP7 299 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 ZNF226Q9NYT6 803 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 MED11Q9P086 117 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 C6orf203Q9P0P8 240 aaPredicted RBP10.23□□□□□ -0.77
VPS28-214ENST00000531032 TBK1Q9UHD2 729 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 WBP11Q9Y2W2 641 aaKnown RBP10.23□□□□□ -0.77
VPS28-214ENST00000531032 ZNF337Q9Y3M9 751 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 ZNF175Q9Y473 711 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 PCNX3Q9H6A9 2034 aa10.23□□□□□ -0.77
VPS28-214ENST00000531032 IGLV3-32A0A0A0MS00 114 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 OR2M5A3KFT3 312 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 SMIM23A6NLE4 172 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 H3BQF6 201 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 GOLGA8RI6L899 631 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 ARHGEF9O43307 516 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 IL33O95760 270 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 FAM153BP0C7A2 387 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 CD8BP10966 210 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 POU2F1P14859 743 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 ADSLP30566 484 aaPredicted RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 NTSP30990 170 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 CLDN20P56880 219 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 STX5Q13190 355 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 FGFBP1Q14512 234 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 SLC29A2Q14542 456 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 PON3Q15166 354 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 ZNHIT3Q15649 155 aaPredicted RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 TMEM44Q2T9K0 475 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 FAM153CQ494X1 144 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 GLYR1Q49A26 553 aaPredicted RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 IKBIPQ70UQ0 350 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 METTL25Q8N6Q8 603 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 CDC26Q8NHZ8 85 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 FAM76AQ8TAV0 307 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 FNDC9Q8TBE3 224 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 MZB1Q8WU39 189 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 ELP4Q96EB1 424 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 CCDC126Q96EE4 140 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 ZNF845Q96IR2 970 aaPredicted RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 MARK4Q96L34 752 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 SLC39A3Q9BRY0 314 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 MED18Q9BUE0 208 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 MRTO4Q9UKD2 239 aaKnown RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 EMCNQ9ULC0 261 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 POLR3HQ9Y535 204 aaPredicted RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 AP4B1Q9Y6B7 739 aa10.22□□□□□ -0.77
VPS28-214ENST00000531032 RAI1Q7Z5J4 1906 aaPredicted RBP10.22□□□□□ -0.77
VPS28-214ENST00000531032 TTC36A6NLP5 189 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 G3V2L1 256 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 H3BML4 177 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 C16orf97H3BN30 126 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 SEC14L5O43304 696 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 RSL1D1O76021 490 aaKnown RBP10.21□□□□□ -0.77
VPS28-214ENST00000531032 UTS2O95399 124 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 PYGBP11216 843 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 FCGR2AP12318 317 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 CLK3P49761 638 aaKnown RBP10.21□□□□□ -0.77
VPS28-214ENST00000531032 PSMD4P55036 377 aaKnown RBP10.21□□□□□ -0.77
VPS28-214ENST00000531032 NAA20P61599 178 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 SIRPAP78324 504 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 PRR5P85299 388 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 IMPG1Q17R60 797 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 Q5PR19 223 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 PRSS57Q6UWY2 283 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 ZYG11AQ6WRX3 759 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 FRMD7Q6ZUT3 714 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 Q71RC1 249 aaPredicted RBP10.21□□□□□ -0.77
VPS28-214ENST00000531032 MARCH3Q86UD3 253 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 CCNYL1Q8N7R7 359 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 LRRN4CLQ8ND94 238 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 OR5M1Q8NGP8 315 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 DUSP19Q8WTR2 217 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 HOXB13Q92826 284 aaPredicted RBP10.21□□□□□ -0.77
VPS28-214ENST00000531032 CAVIN3Q969G5 261 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 PIGTQ969N2 578 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 GFM2Q969S9 779 aaKnown RBP10.21□□□□□ -0.77
VPS28-214ENST00000531032 ARSGQ96EG1 525 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 PIK3IP1Q96FE7 263 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 METTL2AQ96IZ6 378 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms