RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PTGR2Q8N8N7 351 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 EXOSC8Q96B26 276 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 PHF21BQ96EK2 531 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 HS6ST2Q96MM7 605 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 FAIM2Q9BWQ8 316 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 ELOVL6Q9H5J4 265 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 SDHAF3Q9NRP4 125 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 CDC42EP3Q9UKI2 254 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 IGHV4-30-2A0A087WSY4 118 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 SSX4O60224 188 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 THBS1P07996 1170 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 PTNP21246 168 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 TRAF3Q13114 568 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 MFSD12Q6NUT3 480 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 C1orf52Q8N6N3 182 aaKnown RBP18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 KBTBD8Q8NFY9 601 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 OR10D3Q8NH80 312 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 MTBPQ96DY7 904 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 KCNK17Q96T54 332 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 HBEGFQ99075 208 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 C19orf24Q9BVV8 132 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 BEX2Q9BXY8 128 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 FANCFQ9NPI8 374 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 WHRNQ9P202 907 aa18.14■□□□□ 0.49
SQSTM1-215ENST00000514093 PDYNP01213 254 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 PSMB1P20618 241 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 ZNF672Q499Z4 452 aaPredicted RBP18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 MROH9Q5TGP6 573 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 RPS27LQ71UM5 84 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 STK32CQ86UX6 486 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 CEP112Q8N8E3 955 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 OR7G2Q8NG99 324 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 OR4F6Q8NGB9 312 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 MRRFQ96E11 262 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 GPR78Q96P69 363 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 RHNO1Q9BSD3 238 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 DPH5Q9H2P9 285 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 VDAC3Q9Y277 283 aa18.13■□□□□ 0.49
SQSTM1-215ENST00000514093 CXCL13O43927 109 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 CD8AP01732 235 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 TCP1P17987 556 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 PSG6Q00889 435 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 ZNF155Q12901 538 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 TAB1Q15750 504 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 GLYR1Q49A26 553 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 CREG2Q8IUH2 290 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 STEAP2Q8NFT2 490 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 FBF1Q8TES7 1133 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 SELENOMQ8WWX9 145 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 NPAS1Q99742 590 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 OR10A4Q9H209 315 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 ESRP2Q9H6T0 727 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 PCTPQ9UKL6 214 aa18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 MCTS1Q9ULC4 181 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-215ENST00000514093 FAM234BA2RU67 622 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 PPP6CO00743 305 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 KLHL2O95198 593 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 IL3P08700 152 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 RFX3P48380 749 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 PSPHP78330 225 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 TMEM44Q2T9K0 475 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 TMEM249Q2WGJ8 235 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 FIGNL1Q6PIW4 674 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 GALNT10Q86SR1 603 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 ERP27Q96DN0 273 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 C11orf24Q96F05 449 aaPredicted RBP18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 TRAF4Q9BUZ4 470 aaPredicted RBP18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 ALG2Q9H553 416 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 FBXO34Q9NWN3 711 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 TAS2R9Q9NYW1 312 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 SENP1Q9P0U3 644 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 RNF14Q9UBS8 474 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 ABCG2Q9UNQ0 655 aa18.11■□□□□ 0.49
SQSTM1-215ENST00000514093 A0A096LNT2 108 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 A0A096LPK6 155 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 HMX2A2RU54 273 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 TNFSF11O14788 317 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 EIF3HO15372 352 aaKnown RBP eCLIP18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 SYNGR4O95473 234 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 TSPAN8P19075 237 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 AGTR1P30556 359 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 TRA2BP62995 288 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 BSPH1Q075Z2 132 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 TECRLQ5HYJ1 363 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 METTL2BQ6P1Q9 378 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 PLD6Q8N2A8 252 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 ARIH2OSQ8N7S6 290 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 ADGRG7Q96K78 797 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 AMBRA1Q9C0C7 1298 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 BARX1Q9HBU1 254 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 XPR1Q9UBH6 696 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 SVEP1Q4LDE5 3571 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 ALPK2Q86TB3 2170 aa18.1■□□□□ 0.49
SQSTM1-215ENST00000514093 DPRXA6NFQ7 191 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 PLOD3O60568 738 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 RAMP1O60894 148 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 GCM2O75603 506 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 TUBBP07437 444 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 GSTA2P09210 222 aa18.09■□□□□ 0.49
SQSTM1-215ENST00000514093 LETMD1Q6P1Q0 360 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms