RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SDHAF3Q9NRP4 125 aa20.84■□□□□ 0.93
COL9A3-213ENST00000489045 MED11Q9P086 117 aa20.84■□□□□ 0.93
COL9A3-213ENST00000489045 CLCF1Q9UBD9 225 aa20.84■□□□□ 0.93
COL9A3-213ENST00000489045 GIMAP2Q9UG22 337 aa20.84■□□□□ 0.93
COL9A3-213ENST00000489045 FOXD3Q9UJU5 478 aaPredicted RBP20.84■□□□□ 0.93
COL9A3-213ENST00000489045 TTC36A6NLP5 189 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 KCNH1O95259 989 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 IL18BPO95998 194 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 ARRB2P32121 409 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 FRKP42685 505 aaPredicted RBP20.83■□□□□ 0.93
COL9A3-213ENST00000489045 ASMTP46597 345 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 PRKAG1P54619 331 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 MANFP55145 182 aaKnown RBP20.83■□□□□ 0.93
COL9A3-213ENST00000489045 FOXF2Q12947 444 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 FLYWCH1Q4VC44 716 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 WDR93Q6P2C0 686 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 SZRD1Q7Z422 152 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 MARCH3Q86UD3 253 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 NUP43Q8NFH3 380 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 GPR151Q8TDV0 419 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 RMND5BQ96G75 393 aaPredicted RBP20.83■□□□□ 0.93
COL9A3-213ENST00000489045 ZFP3Q96NJ6 502 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 UCN2Q96RP3 112 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 TM9SF2Q99805 663 aa20.83■□□□□ 0.93
COL9A3-213ENST00000489045 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.83■□□□□ 0.933e-11■■□□□ 13.3
COL9A3-213ENST00000489045 V9GYY5 206 aaPredicted RBP20.83■□□□□ 0.93
COL9A3-213ENST00000489045 MPDZO75970 2070 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 CTAG2O75638 210 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 UTS2O95399 124 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 IGKV1D-16P01601 117 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 HK1P19367 917 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 EFNA1P20827 205 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-213ENST00000489045 MAP3K8P41279 467 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 CLK3P49761 638 aaKnown RBP20.82■□□□□ 0.92
COL9A3-213ENST00000489045 TESK1Q15569 626 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 XKR7Q5GH72 579 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 RAET1LQ5VY80 246 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 CEP70Q8NHQ1 597 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 FBXO30Q8TB52 745 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 NRGNQ92686 78 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 HOXB13Q92826 284 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-213ENST00000489045 WNT2BQ93097 391 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 MTERF3Q96E29 417 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 GIMAP5Q96F15 307 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 PPP3R2Q96LZ3 170 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 GPATCH1Q9BRR8 931 aaKnown RBP20.82■□□□□ 0.92
COL9A3-213ENST00000489045 ACSS1Q9NUB1 689 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-213ENST00000489045 DNAJB12Q9NXW2 375 aaKnown RBP20.82■□□□□ 0.92
COL9A3-213ENST00000489045 JKAMPQ9P055 326 aa20.82■□□□□ 0.92
COL9A3-213ENST00000489045 AKAP6Q13023 2319 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 NKX2-2O95096 273 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 RCBTB2O95199 551 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 SLU7O95391 586 aaKnown RBP20.81■□□□□ 0.92
COL9A3-213ENST00000489045 SERPINB5P36952 375 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 HPCAL1P37235 193 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 GANABQ14697 944 aaKnown RBP20.81■□□□□ 0.92
COL9A3-213ENST00000489045 GRAMD1BQ3KR37 738 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 VPS26BQ4G0F5 336 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 R3HCC1LQ7Z5L2 792 aaKnown RBP20.81■□□□□ 0.92
COL9A3-213ENST00000489045 EXOC3L1Q86VI1 746 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 GRAMD2AQ8IUY3 354 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 GCNT2Q8N0V5 402 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 CDRT4Q8N9R6 151 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 DUSP19Q8WTR2 217 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 SLC9A6Q92581 669 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 INTS12Q96CB8 462 aaKnown RBP20.81■□□□□ 0.92
COL9A3-213ENST00000489045 MS4A4EQ96PG1 132 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 SFXN3Q9BWM7 321 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 TBL1XR1Q9BZK7 514 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 PTGES2Q9H7Z7 377 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 NTMQ9P121 344 aa20.81■□□□□ 0.92
COL9A3-213ENST00000489045 TMEM114B3SHH9 223 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 SCAMP2O15127 329 aaKnown RBP20.8■□□□□ 0.92
COL9A3-213ENST00000489045 HCRTR2O43614 444 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 TYROBPO43914 113 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 PEX11AO75192 247 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 SKAP2O75563 359 aaPredicted RBP20.8■□□□□ 0.92
COL9A3-213ENST00000489045 BPGMP07738 259 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 ACP2P11117 423 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 PEPDP12955 493 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 MAPK1P28482 360 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 BCL2A1Q16548 175 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 GALNT10Q86SR1 603 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 UBQLNLQ8IYU4 475 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 FAM222BQ8WU58 562 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 C1GALT1C1Q96EU7 318 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 C3orf30Q96M34 536 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 TMEM109Q9BVC6 243 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 POLDIP3Q9BY77 421 aaKnown RBP20.8■□□□□ 0.92
COL9A3-213ENST00000489045 ATP6V1HQ9UI12 483 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 ZDHHC2Q9UIJ5 367 aa20.8■□□□□ 0.92
COL9A3-213ENST00000489045 EMC8O43402 210 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 ANGPTL1O95841 491 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 PRR5P85299 388 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 ATP6AP1LQ52LC2 224 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 MFSD12Q6NUT3 480 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 LRIG3Q6UXM1 1119 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 APOOLQ6UXV4 268 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 KIF18BQ86Y91 864 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms