RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ZBED6CLQ96FA7 236 aaPredicted RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 OR10A4Q9H209 315 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 GDF2Q9UK05 429 aaPredicted RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 EMC9Q9Y3B6 208 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 ZNF780BQ9Y6R6 833 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 A0A096LPK6 155 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 STX16-NPEPL1H3BU86 382 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 STX16O14662 325 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 GCM2O75603 506 aaPredicted RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 PSMG1O95456 288 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 CD8AP01732 235 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 IL3P08700 152 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 IDUAP35475 653 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 KRT20P35900 424 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 ARL1P40616 181 aaPredicted RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 NAB1Q13506 487 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 CHRFAM7AQ494W8 412 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 GLYR1Q49A26 553 aaPredicted RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 NCMAPQ5T1S8 102 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 UBAP2Q5T6F2 1119 aaKnown RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 TTC19Q6DKK2 380 aaPredicted RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 MARCH3Q86UD3 253 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 GFM2Q969S9 779 aaKnown RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 FBXW5Q969U6 566 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 ATP6V1E2Q96A05 226 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 EXOSC8Q96B26 276 aaKnown RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 S100PBPQ96BU1 408 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 MTBPQ96DY7 904 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 FAIM2Q9BWQ8 316 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 STMN4Q9H169 189 aaPredicted RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 ELOVL6Q9H5J4 265 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 BRF2Q9HAW0 419 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 FAM120CQ9NX05 1096 aaKnown RBP13.7□□□□□ -0.22
MCF2L-228ENST00000487354 PSME2Q9UL46 239 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 LIPT1Q9Y234 373 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 RNF115Q9Y4L5 304 aa13.7□□□□□ -0.22
MCF2L-228ENST00000487354 A8MV72 311 aaPredicted RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 TP53P04637 393 aaPredicted RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 FAM157CP0CG43 387 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 CHN1P15882 459 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 PSMA4P25789 261 aaKnown RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 AGTR1P30556 359 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 STX2P32856 288 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 EIF1AXP47813 144 aaKnown RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 RPS3AP61247 264 aaKnown RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 TSC22D1Q15714 1073 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 ERCC6LQ2NKX8 1250 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 ZNF672Q499Z4 452 aaPredicted RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 C6orf52Q5T4I8 152 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 MFSD12Q6NUT3 480 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 GALNT10Q86SR1 603 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 GABRG1Q8N1C3 465 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 KBTBD8Q8NFY9 601 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 OR10D3Q8NH80 312 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 ZNF483Q8TF39 744 aaPredicted RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 DUSP19Q8WTR2 217 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 SMAP2Q8WU79 429 aaPredicted RBP13.69□□□□□ -0.22
MCF2L-228ENST00000487354 KLHDC3Q9BQ90 382 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 ERP44Q9BS26 406 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 RNF14Q9UBS8 474 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 MCM8Q9UJA3 840 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 GPR52Q9Y2T5 361 aa13.69□□□□□ -0.22
MCF2L-228ENST00000487354 IGHV4-30-2A0A087WSY4 118 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 EIF1AYO14602 144 aaKnown RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 RAD51CO43502 376 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 SBK3P0C264 359 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 TSPAN8P19075 237 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 MAGEA12P43365 314 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 MRPS22P82650 360 aaKnown RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 ZNF155Q12901 538 aaPredicted RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 TRADDQ15628 312 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 LGSNQ5TDP6 509 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 ZDHHC24Q6UX98 284 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 DNAJC14Q6Y2X3 702 aaPredicted RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 BEND4Q6ZU67 534 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 SELENOMQ8WWX9 145 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 C11orf24Q96F05 449 aaPredicted RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 TRMT61AQ96FX7 289 aaKnown RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 TRAF4Q9BUZ4 470 aaPredicted RBP13.68□□□□□ -0.22
MCF2L-228ENST00000487354 TRIM2Q9C040 744 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 PTGES2Q9H7Z7 377 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 PFDN4Q9NQP4 134 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 XPR1Q9UBH6 696 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 OR10H1Q9Y4A9 318 aa13.68□□□□□ -0.22
MCF2L-228ENST00000487354 ADAMDEC1O15204 470 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 CLOCKO15516 846 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 CXCL13O43927 109 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 NTN1O95631 604 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 IL33O95760 270 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 IGKV1D-16P01601 117 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 ZNF17P17021 662 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 MAGEA4P43358 317 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 CDH13P55290 713 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 CTBP2P56545 445 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 CALCOCO2Q13137 446 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 TAB1Q15750 504 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 SGCBQ16585 318 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 CYP27C1Q4G0S4 372 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.67□□□□□ -0.22
MCF2L-228ENST00000487354 FAM9CQ8IZT9 166 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms