RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NSDHLQ15738 373 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 TOR1AIP2Q8NFQ8 470 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 LRRC46Q96FV0 321 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ADAD1Q96M93 576 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 G6PC3Q9BUM1 346 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CPNE7Q9UBL6 633 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 A3GALT2U3KPV4 340 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 SHROOM3Q8TF72 1996 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 RDH16O75452 317 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CD2P06729 351 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CNR2P34972 360 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CDKN2CP42773 168 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CSNK1EP49674 416 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 HSD17B12Q53GQ0 312 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ALG1LQ6GMV1 187 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 OR2T33Q8NG76 320 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM234Q8WY98 164 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 GAL3ST3Q96A11 431 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 LRR1Q96L50 414 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 SERINC2Q96SA4 455 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CPPED1Q9BRF8 314 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PPIL3Q9H2H8 161 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 B3GAT2Q9NPZ5 323 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 A0A0A6YYC8 382 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ANXA2P2A6NMY6 339 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 I3L1I5 382 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 FZD6O60353 706 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 TRIM3O75382 744 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 KDM4BO94953 1096 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 SOX30O94993 753 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ANXA2P07355 339 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 MRPL3P09001 348 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 HK1P19367 917 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 CELP19835 753 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 UQCRC1P31930 480 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 EIF2DP41214 584 aaKnown RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ADPRMQ3LIE5 342 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ZNF613Q6PF04 617 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 ADAMTSL4Q6UY14 1074 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 LHFPL3Q86UP9 236 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 SLC22A8Q8TCC7 542 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PSD2Q9BQI7 771 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 MMP28Q9H239 520 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 MTHFD2LQ9H903 347 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-228ENST00000486227 TRIM36Q9NQ86 728 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 FBXO8Q9NRD0 319 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 PLCL2Q9UPR0 1127 aa10.39□□□□□ -0.75
HDAC6-228ENST00000486227 SLC35F4A4IF30 521 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 FOXE1O00358 373 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 SCO2O43819 266 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 JRKO75564 520 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 CYB5AP00167 134 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 EDNRAP25101 427 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 AFF3P51826 1226 aaKnown RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 PLCXD2Q0VAA5 305 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 DSG2Q14126 1118 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 TSC22D1Q15714 1073 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 GFOD2Q3B7J2 385 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 SYT6Q5T7P8 510 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 WDR53Q7Z5U6 358 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 PIAS4Q8N2W9 510 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 ZNF548Q8NEK5 533 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 RFT1Q96AA3 541 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 PNPLA2Q96AD5 504 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 NLKQ9UBE8 527 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 IL20RAQ9UHF4 553 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 EXOSC1Q9Y3B2 195 aaKnown RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 NOX1Q9Y5S8 564 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 A0A1B0GVT2 93 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 OR14I1A6ND48 311 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 SGK494L7N484 410 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 LDB3O75112 727 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 ADAP00813 363 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 CDK1P06493 297 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 NPPBP16860 134 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 UGT2B10P36537 528 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 UGT8Q16880 541 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM52BQ4KMG9 183 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 C1QTNF12Q5T7M4 302 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 DNM1P34Q6PK57 102 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 OR6N1Q8NGY5 312 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 EPHX3Q9H6B9 360 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 NMNAT1Q9HAN9 279 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 SRPK3Q9UPE1 567 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 A0A0J9YY10 115 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 SLC9B1P1A6NJY1 282 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 BMP1P13497 986 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 DNASE1P24855 282 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 DEFA5Q01523 94 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 CDKN3Q16667 212 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 TRIM61Q5EBN2 209 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 ASTLQ6HA08 431 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 VN1R3Q9BXE9 311 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 LRIT1Q9P2V4 623 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 EXTL2Q9UBQ6 330 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 TARM1B6A8C7 271 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 TACSTD2P09758 323 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 RGS6P49758 472 aa10.38□□□□□ -0.75
HDAC6-228ENST00000486227 CRYZQ08257 329 aaKnown RBP10.38□□□□□ -0.75
HDAC6-228ENST00000486227 MICAQ29983 383 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms