RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TLX2O43763 284 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 GPX5O75715 221 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 TRHRP34981 398 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 CD97P48960 835 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 RGS8P57771 180 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 COPZ1P61923 177 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 DOC2BQ14184 412 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 DEFB134Q4QY38 66 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF730Q6ZMV8 503 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF836Q6ZNA1 936 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 GDF7Q7Z4P5 450 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 RNF113BQ8IZP6 322 aaKnown RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 ARHGEF39Q8N4T4 335 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 FAM3CQ92520 227 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 CTHRC1Q96CG8 243 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 SLC41A3Q96GZ6 507 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 LRR1Q96L50 414 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 CHCHD6Q9BRQ6 235 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 TEX12Q9BXU0 123 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 QRSL1Q9H0R6 528 aaKnown RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 C6orf106Q9H6K1 298 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 EQTNQ9NQ60 294 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 EVA1BQ9NVM1 165 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 WDR45Q9Y484 360 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 PNMA8CA0A1B0GUJ8 204 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 GALR3O60755 368 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 GPR75O95800 540 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 HBQ1P09105 142 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 S100A5P33763 92 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 PTGER1P34995 402 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 CRYBB2P43320 205 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 SNRPNP63162 240 aaKnown RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 DUSP5Q16690 384 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 SLC34A3Q8N130 599 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 CA13Q8N1Q1 262 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 SLC44A3Q8N4M1 653 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 ZG16BQ96DA0 208 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 MCHR1Q99705 422 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 PLA2G12AQ9BZM1 189 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 CRNNQ9UBG3 495 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-212ENST00000477970 WNT16Q9UBV4 365 aa11.39□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF670-ZNF695F2Z2N8 137 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 MYL12BO14950 172 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 NARSO43776 548 aaKnown RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 FCMRO60667 390 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 THY1P04216 161 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 HSMCR30P0CW71 290 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 PSMA1P25786 263 aaKnown RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF136P52737 540 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 RAB38P57729 211 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 MGAT2Q10469 447 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 PRICKLE4Q2TBC4 344 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 AGAP7PQ5VUJ5 663 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 PLEKHM3Q6ZWE6 761 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CCDC190Q86UF4 302 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CLIP4Q8N3C7 705 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 IQCF1Q8N6M8 205 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 OR13H1Q8NG92 308 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 OR8D4Q8NGM9 314 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 OR9Q1Q8NGQ5 310 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CPNE5Q9HCH3 593 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 LOC105369274A0A096LPK9 316 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 LOC102723532A0A0G2JNH3 316 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 LOC100506127A0A0U1RQW1 187 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 SPTY2D1-AS1A0A0U1RR47 76 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CPSF4LA6NMK7 179 aaKnown RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CDH3P22223 829 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 LSSP48449 732 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 ACSM1Q08AH1 577 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 EIF2B5Q13144 721 aaKnown RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 SNAPC1Q16533 368 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 RANBP3LQ86VV4 465 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 OR4N4Q8N0Y3 316 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 ZCCHC10Q8TBK6 192 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 BRIX1Q8TDN6 353 aaKnown RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 RFKQ969G6 155 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 SLC35B4Q969S0 331 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 MED18Q9BUE0 208 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CLEC2DQ9UHP7 191 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 TRAPPC4Q9Y296 219 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 EXOGQ9Y2C4 368 aaKnown RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CDH10Q9Y6N8 788 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 CACNA1IQ9P0X4 2223 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 SLC35F4A4IF30 521 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 LOC110117498-PIK3R3F6TDL0 507 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 STX11O75558 287 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 SIM1P81133 766 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-212ENST00000477970 TBC1D25Q3MII6 688 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 ZNF620Q6ZNG0 422 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 PHC2Q8IXK0 858 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 AVL9Q8NBF6 648 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 FLCNQ8NFG4 579 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 PIK3R3Q92569 461 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 WDFY2Q96P53 400 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 EGLN3Q9H6Z9 239 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 UCK1Q9HA47 277 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 C14orf105Q9NVL8 296 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 TMEM131Q92545 1883 aa11.38□□□□□ -0.59
PTPRF-212ENST00000477970 OR5K3A6NET4 321 aa11.37□□□□□ -0.59
PTPRF-212ENST00000477970 TMEM221A6NGB7 291 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms