RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 Q7L0L9 218 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 LPCAT2Q7L5N7 544 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 LHFPL4Q7Z7J7 247 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 FNDC8Q8TC99 324 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ART4Q93070 314 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ADIPOR1Q96A54 375 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 C11orf24Q96F05 449 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 C16orf45Q96MC5 204 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 MCCC1Q96RQ3 725 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 CARD6Q9BX69 1037 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 DPH5Q9H2P9 285 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 RPAP3Q9H6T3 665 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 POLE3Q9NRF9 147 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 DUS2Q9NX74 493 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 ATP6V1HQ9UI12 483 aa2.2□□□□□ -2.06
CCDC88A-212ENST00000474059 POGZQ7Z3K3 1410 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 A0A087WZY1 265 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 A0A1B0GUL7 405 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 WASHC1A8K0Z3 465 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 WASH3PC4AMC7 463 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 SDHDO14521 159 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 HDAC3O15379 428 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 AK1P00568 194 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 IFNB1P01574 187 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 NCF1P14598 390 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 DPP4P27487 766 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 AXLP30530 894 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 ADRA1AP35348 466 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 CYLC1P35663 651 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 PTGFRP43088 359 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 IL9RQ01113 521 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 TFDP1Q14186 410 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 TRIP10Q15642 601 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 PPP1R3AQ16821 1122 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 TIMM50Q3ZCQ8 353 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 DNAJC21Q5F1R6 531 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 BTNL3Q6UXE8 466 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 WASH2PQ6VEQ5 465 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 CBWD2Q8IUF1 395 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 GCNT2Q8N0V5 402 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 RFESDQ8TAC1 157 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 RSPH1Q8WYR4 309 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 PINX1Q96BK5 328 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 ZBED6CLQ96FA7 236 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 C9orf85Q96MD7 179 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 VSTM2LQ96N03 204 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 TESK2Q96S53 571 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 FICDQ9BVA6 458 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 COQ10BQ9H8M1 238 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 LPAR2Q9HBW0 351 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 C1orf123Q9NWV4 160 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 PRODH2Q9UF12 536 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 RSPH14Q9UHP6 348 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 EXOSC1Q9Y3B2 195 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 METP08581 1390 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 FER1L5A0AVI2 2057 aa2.19□□□□□ -2.06
CCDC88A-212ENST00000474059 RALGAPA1Q6GYQ0 2036 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 GRIN2DO15399 1336 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 TRBV7-9A0A0J9YWB2 115 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 ZSCAN5CA6NGD5 496 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 TNFSF11O14788 317 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 CASKO14936 926 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 CLDN3O15551 220 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 OR4F21O95013 312 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 PRAMEF12O95522 483 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 HEXBP07686 556 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 ALPIP09923 528 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF32P17041 273 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 DESP17661 470 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 IDSP22304 550 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 IGFBP5P24593 272 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 MDH1P40925 334 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 ARHGDIBP52566 201 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 METAP1P53582 386 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 IST1P53990 364 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 RPS6P62753 249 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 UBE2V2Q15819 145 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 MICAQ29983 383 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 SLC22A6Q4U2R8 563 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 HSP90AA5PQ58FG0 334 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 SLX4IPQ5VYV7 408 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 NIPAL3Q6P499 406 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 AFTPHQ6ULP2 937 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 NAXDQ8IW45 347 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 EFCAB13Q8IY85 973 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 TADA1Q96BN2 335 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 RANBP9Q96S59 729 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 MAPKAP1Q9BPZ7 522 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 TBCDQ9BTW9 1192 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 MRPL13Q9BYD1 178 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 GPN2Q9H9Y4 310 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 MEPEQ9NQ76 525 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 TIGARQ9NQ88 270 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 AGPAT5Q9NUQ2 364 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 IMPAD1Q9NX62 359 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 BARX2Q9UMQ3 279 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 MFHAS1Q9Y4C4 1052 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 U3KQV3 271 aa2.18□□□□□ -2.06
CCDC88A-212ENST00000474059 LRRC30A6NM36 301 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms