RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DSCR4P56555 118 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 FOXF2Q12947 444 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 KRTAP21-3Q3LHN1 58 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 RAET1LQ5VY80 246 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 EMBQ6PCB8 327 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 FADS6Q8N9I5 356 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 NUP43Q8NFH3 380 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 OR2M3Q8NG83 312 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 FBXO30Q8TB52 745 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 ZBED6CLQ96FA7 236 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 RMND5BQ96G75 393 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 ZNF764Q96H86 408 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 GPATCH1Q9BRR8 931 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 TMUB1Q9BVT8 246 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 RTN4RQ9BZR6 473 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 ROPN1BQ9BZX4 212 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 CXXC4Q9H2H0 198 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 ROPN1Q9HAT0 212 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 C3orf14Q9HBI5 128 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 SDHAF3Q9NRP4 125 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 MED11Q9P086 117 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 ABCG2Q9UNQ0 655 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 TMED5Q9Y3A6 229 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 GMFGO60234 142 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 TBX19O60806 448 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 SKAP2O75563 359 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 KCNH1O95259 989 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 UTS2O95399 124 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 FGF4P08620 206 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 BCKDHAP12694 445 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 HK1P19367 917 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 CHMP24386 653 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 ASMTP46597 345 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 CLK3P49761 638 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 PSMD4P55036 377 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 CLDN18P56856 261 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 PDE7AQ13946 482 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 UGT3A2Q3SY77 523 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 FBXL19-AS1Q494R0 122 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 FLYWCH1Q4VC44 716 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 GALNT10Q86SR1 603 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 MARCH3Q86UD3 253 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 GRAMD2AQ8IUY3 354 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 UBQLNLQ8IYU4 475 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 GCNT2Q8N0V5 402 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 OR5M1Q8NGP8 315 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 GPR151Q8TDV0 419 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 SLC9A6Q92581 669 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 CAVIN3Q969G5 261 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 INTS12Q96CB8 462 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 FOXC2Q99958 501 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 G6PC3Q9BUM1 346 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 POLDIP3Q9BY77 421 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 TBL1XR1Q9BZK7 514 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 FAM120CQ9NX05 1096 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 CLCF1Q9UBD9 225 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 MRPS18CQ9Y3D5 142 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 ITPR3Q14573 2671 aa14.23□□□□□ -0.13
CCDC88B-205ENST00000472524 TTC36A6NLP5 189 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 PEX11AO75192 247 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 SLU7O95391 586 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 IL18BPO95998 194 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 IGKV1D-16P01601 117 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 IFI6P09912 130 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 ZNF708P17019 499 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 HPCAL1P37235 193 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 PEX19P40855 299 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 B3GALT5-AS1P59052 145 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 GRAMD1BQ3KR37 738 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 P4HA3Q7Z4N8 544 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 ADGRE4PQ86SQ3 457 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 LUZP2Q86TE4 346 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 EXOC3L1Q86VI1 746 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 CEP70Q8NHQ1 597 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 DUSP19Q8WTR2 217 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 NINJ1Q92982 152 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 WNT2BQ93097 391 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 OTUB1Q96FW1 271 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 PPP3R2Q96LZ3 170 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 MS4A4EQ96PG1 132 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 TM9SF2Q99805 663 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 C1orf50Q9BV19 199 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 CLEC4MQ9H2X3 399 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 ST6GALNAC2Q9UJ37 374 aa14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 FOXD3Q9UJU5 478 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-205ENST00000472524 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 TMEM114B3SHH9 223 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 NKX2-2O95096 273 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 RCBTB2O95199 551 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 BPGMP07738 259 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 ACP2P11117 423 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 PEPDP12955 493 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 MAPK1P28482 360 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 ARRB2P32121 409 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 FRKP42685 505 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 GANABQ14697 944 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 VPS26BQ4G0F5 336 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 ATP6AP1LQ52LC2 224 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 XKR7Q5GH72 579 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 WDR93Q6P2C0 686 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms