RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PAOXQ6QHF9 649 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 LYPD8Q6UX82 237 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 RTL4Q6ZR62 310 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 TAGAPQ8N103 731 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 RPRMLQ8N4K4 120 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 GOLM1Q8NBJ4 401 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 VPS37AQ8NEZ2 397 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 OR2M7Q8NG81 312 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 LCORQ96JN0 433 aaPredicted RBP10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 VSTM2LQ96N03 204 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 RILPQ96NA2 401 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 TMEM120AQ9BXJ8 343 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 NXF5Q9H1B4 397 aaKnown RBP10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 FOLH1BQ9HBA9 442 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 C3orf14Q9HBI5 128 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 PLSCR2Q9NRY7 297 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 FAM120CQ9NX05 1096 aaKnown RBP10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 NTMQ9P121 344 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 TRIM33Q9UPN9 1127 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 ZNF407Q9C0G0 2248 aa10.9□□□□□ -0.66
SQSTM1-206ENST00000466342 ARHGAP21Q5T5U3 1957 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 PRSS51A0A1B0GVH4 220 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 FRG2CA6NGY1 282 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 A6NNC1 897 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 C9JVG2 144 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 INAFM1C9JVW0 142 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 CFLARO15519 480 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 EMC8O43402 210 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 HS6ST1O60243 411 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 NME6O75414 186 aaPredicted RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 ERN1O75460 977 aaKnown RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 IL6P05231 212 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 PGRP06401 933 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 FBXO45P0C2W1 286 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 DRD5P21918 477 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 PPICP45877 212 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 ZFP36L2P47974 494 aaKnown RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 GYS2P54840 703 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 NRG3P56975 720 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 HBA1P69905 142 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 NKX6-1P78426 367 aaPredicted RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 PRR5P85299 388 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 ZNF155Q12901 538 aaPredicted RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 SQLEQ14534 574 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 NNATQ16517 81 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 CMPK2Q5EBM0 449 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 TMEM64Q6YI46 380 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 GK5Q6ZS86 529 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 DND1Q8IYX4 353 aaKnown RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 CLECL1Q8IZS7 167 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 NUP43Q8NFH3 380 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 OR9I1Q8NGQ6 314 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 SPACA9Q96E40 222 aaPredicted RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM120BQ96EK7 910 aaKnown RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 HSPBAP1Q96EW2 488 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 CHMP6Q96FZ7 201 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 COX4I2Q96KJ9 171 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 MS4A4EQ96PG1 132 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 BTBD9Q96Q07 612 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM173AQ9BQD7 235 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 CXorf36Q9H7Y0 433 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 DEPPQ9NTK1 212 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 ZCCHC3Q9NUD5 404 aaKnown RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 KLHL14Q9P2G3 628 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 BTNL2Q9UIR0 455 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 PCDHGB4Q9UN71 923 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 GPR55Q9Y2T6 319 aaPredicted RBP10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 ZANQ9Y493 2812 aa10.89□□□□□ -0.67
SQSTM1-206ENST00000466342 TLN2Q9Y4G6 2542 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM234BA2RU67 622 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 RNF212BA8MTL3 300 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ACOT7O00154 380 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 TO15178 435 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ACOX3O15254 700 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 P04436 131 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ABCB1P08183 1280 aaPredicted RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 CT45A8P0DMV1 189 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 CT45A9P0DMV2 189 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 LSP1P33241 339 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 RFC3P40938 356 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 CCT3P49368 545 aaKnown RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 TMED10P49755 219 aaKnown RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 POLR2JP52435 117 aaKnown RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ARFIP2P53365 341 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 CORO7P57737 925 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 PPIAP62937 165 aaKnown RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 PSPHP78330 225 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 PSG6Q00889 435 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 LRRC74AQ0VAA2 488 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ZNF791Q3KP31 576 aaPredicted RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 CT45A2Q5DJT8 189 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 EMC4Q5J8M3 183 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 METTL21CQ5VZV1 264 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ARHGAP11AQ6P4F7 1023 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 NPSR1Q6W5P4 371 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 SZRD1Q7Z422 152 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC22A16Q86VW1 577 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ANKRD46Q86W74 232 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 PHC2Q8IXK0 858 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms