RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CLDN18P56856 261 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 SORDQ00796 357 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 GAB1Q13480 694 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 PDE7AQ13946 482 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 ZNF385BQ569K4 471 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 POMZP3Q6PJE2 187 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 Q6ZSR9 355 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 CHMP1BQ7LBR1 199 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 P4HA3Q7Z4N8 544 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 R3HCC1LQ7Z5L2 792 aaKnown RBP12.64□□□□□ -0.39
USP4-206ENST00000461553 ADGRE4PQ86SQ3 457 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 FADS6Q8N9I5 356 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 OR2M3Q8NG83 312 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 CEP70Q8NHQ1 597 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 AGR3Q8TD06 166 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 TCP10LQ8TDR4 215 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 GPR151Q8TDV0 419 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 FAM222BQ8WU58 562 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 WNT2BQ93097 391 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 RMND5BQ96G75 393 aaPredicted RBP12.64□□□□□ -0.39
USP4-206ENST00000461553 ROPN1BQ9BZX4 212 aaPredicted RBP12.64□□□□□ -0.39
USP4-206ENST00000461553 CLEC4MQ9H2X3 399 aaPredicted RBP12.64□□□□□ -0.39
USP4-206ENST00000461553 DSN1Q9H410 356 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 ROPN1Q9HAT0 212 aaPredicted RBP12.64□□□□□ -0.39
USP4-206ENST00000461553 FLRT3Q9NZU0 649 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 SLC17A7Q9P2U7 560 aa12.64□□□□□ -0.39
USP4-206ENST00000461553 TUBAL3A6NHL2 446 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 C17orf51A8MQB3 221 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 FADS1O60427 444 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 CTAG2O75638 210 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 RCBTB2O95199 551 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 PEPDP12955 493 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 GABRA3P34903 492 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 RPL3P39023 403 aaKnown RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 MANFP55145 182 aaKnown RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 ATP6AP1LQ52LC2 224 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 RFTN2Q52LD8 501 aaPredicted RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 ARL13AQ5H913 290 aaPredicted RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 FBXW10Q5XX13 1052 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 ZCCHC23Q6ZST2 131 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 UBQLNLQ8IYU4 475 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 GCNT2Q8N0V5 402 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 MEIOBQ8N635 442 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 CDRT4Q8N9R6 151 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 NUP43Q8NFH3 380 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 FBXO30Q8TB52 745 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 AENQ8WTP8 325 aaKnown RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 PIK3R3Q92569 461 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 SLC9A6Q92581 669 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 INTS12Q96CB8 462 aaKnown RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 MTERF3Q96E29 417 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 PPP3R2Q96LZ3 170 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 UCN2Q96RP3 112 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 ACSS1Q9NUB1 689 aaPredicted RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 MED11Q9P086 117 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 TRAF6Q9Y4K3 522 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 PRRC2AP48634 2157 aaKnown RBP12.63□□□□□ -0.39
USP4-206ENST00000461553 ITPR3Q14573 2671 aa12.63□□□□□ -0.39
USP4-206ENST00000461553 GXYLT2A0PJZ3 443 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 A6NNC1 897 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 B4DXG7 233 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 H3BML4 177 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 LINC01387J3KSC0 135 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 SCAMP2O15127 329 aaKnown RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 SEC14L5O43304 696 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 HCRTR2O43614 444 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 ZIC3O60481 467 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 SKAP2O75563 359 aaPredicted RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 UTS2O95399 124 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 FGF4P08620 206 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 BCKDHAP12694 445 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 CD1EP15812 388 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 DNAJA1P31689 397 aaKnown RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 FRKP42685 505 aaPredicted RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 PRKAG1P54619 331 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 DIO3P55073 304 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 EEFSECP57772 596 aaKnown RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 B3GALT5-AS1P59052 145 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 PRR5P85299 388 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 FOXF2Q12947 444 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 TESK1Q15569 626 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 BCL2A1Q16548 175 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 GRAMD1BQ3KR37 738 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 PLXDC2Q6UX71 529 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 LRIG3Q6UXM1 1119 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 SPNS3Q6ZMD2 512 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 LUZP2Q86TE4 346 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 GOT1L1Q8NHS2 421 aaPredicted RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 JADE3Q92613 823 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 NRGNQ92686 78 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 NINJ1Q92982 152 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 CAVIN3Q969G5 261 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 C1GALT1C1Q96EU7 318 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 PIGQQ9BRB3 760 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 G6PC3Q9BUM1 346 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 RBM24Q9BX46 236 aaKnown RBP12.62□□□□□ -0.39
USP4-206ENST00000461553 PIGMQ9H3S5 423 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 HHATLQ9HCP6 504 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 RASSF1Q9NS23 344 aa12.62□□□□□ -0.39
USP4-206ENST00000461553 JKAMPQ9P055 326 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms