RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ADAMTS19Q8TE59 1207 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF480Q8WV37 535 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 CNOT9Q92600 299 aaKnown RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 FOPNLQ96NB1 174 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 OR51I1Q9H343 314 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 NUBP2Q9Y5Y2 271 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 AP1M2Q9Y6Q5 423 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 VCANP13611 3396 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 REM1O75628 298 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 UBXN7O94888 489 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 MPC1LP0DKB6 136 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 PDE7AQ13946 482 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ELOAQ14241 798 aaKnown RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF322Q6U7Q0 402 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 C3P1Q6ZMU1 363 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF707Q96C28 371 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ZG16BQ96DA0 208 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 TMEM169Q96HH4 297 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 GPBP1L1Q9HC44 474 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 LYARQ9NX58 379 aaKnown RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 SCP2D1Q9UJQ7 156 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 COPS3Q9UNS2 423 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 SCN8AQ9UQD0 1980 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 GLOD5A6NK44 160 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 PIP5K1CO60331 668 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 TFP02787 698 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 NR2F1P10589 423 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 MAPK9P45984 424 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 SLC16A1P53985 500 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 HBMQ6B0K9 141 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 OR5M10Q6IEU7 315 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 TPRG1Q6ZUI0 275 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 CPOQ8IVL8 374 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 BOLLQ8N9W6 283 aaKnown RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 C17orf47Q8NEP4 570 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 TTLQ8NG68 377 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ASZ1Q8WWH4 475 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 LINC01599Q8WXQ3 324 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 HGDQ93099 445 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ECHDC3Q96DC8 303 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ERMAPQ96PL5 475 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ZCCHC4Q9H5U6 513 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 RETREG1Q9H6L5 497 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 WASH6PQ9NQA3 447 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 MRPL39Q9NYK5 338 aaKnown RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 GPR160Q9UJ42 338 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 POMT2Q9UKY4 750 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 BAIAP2Q9UQB8 552 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 GPR55Q9Y2T6 319 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 FAM74A7A6NL05 159 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 PPM1DO15297 605 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 UGDHO60701 494 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 MTRF1O75570 445 aaKnown RBP10.97□□□□□ -0.65
CPSF3-202ENST00000460593 NMBP08949 121 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 NPPBP16860 134 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 HOXD10P28358 340 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 SERPINA4P29622 427 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 UBE2MP61081 183 aaKnown RBP10.97□□□□□ -0.65
CPSF3-202ENST00000460593 MAP2K5Q13163 448 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 GPR17Q13304 367 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 FAM74A3Q4VXF1 159 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 NHLRC3Q5JS37 347 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 NDUFAF5Q5TEU4 345 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 FCRLBQ6BAA4 426 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 CEACAM19Q7Z692 300 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 SERPINA12Q8IW75 414 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 CHST14Q8NCH0 376 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 OR10Z1Q8NGY1 313 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 VOPP1Q96AW1 172 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 CCDC86Q9H6F5 360 aaKnown RBP10.97□□□□□ -0.65
CPSF3-202ENST00000460593 NPC1O15118 1278 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 EFCAB14O75071 495 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 RGS9O75916 674 aaPredicted RBP10.97□□□□□ -0.65
CPSF3-202ENST00000460593 RAD52P43351 418 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 PLEKHS1Q5SXH7 462 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 SLC25A25Q6KCM7 469 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 HSD11B1LQ7Z5J1 315 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 KRT78Q8N1N4 520 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 AMER3Q8N944 861 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 TRPV1Q8NER1 839 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 RPLP0P6Q8NHW5 317 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 TMEM159Q96B96 161 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 F2RL3Q96RI0 385 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 C20orf85Q9H1P6 137 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 MGAT4CQ9UBM8 478 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 PHF11Q9UIL8 331 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 PCDHGA9Q9Y5G4 932 aaKnown RBP10.97□□□□□ -0.65
CPSF3-202ENST00000460593 PLXNB3Q9ULL4 1909 aa10.97□□□□□ -0.65
CPSF3-202ENST00000460593 MKI67P46013 3256 aaKnown RBP10.96□□□□□ -0.65
CPSF3-202ENST00000460593 ANXA2P2A6NMY6 339 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 L7N2F9 121 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 MID1O15344 667 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 CHST10O43529 356 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 HSD3B2P26439 372 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 SPINT3P49223 89 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 MAZP56270 477 aaKnown RBP10.96□□□□□ -0.65
CPSF3-202ENST00000460593 SNTB2Q13425 540 aaKnown RBP10.96□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF750Q32MQ0 723 aa10.96□□□□□ -0.65
CPSF3-202ENST00000460593 PLBD1Q6P4A8 553 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms