RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 MBD3L3A6NE82 208 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 MBD3L5A6NJ08 208 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 C17orf51A8MQB3 221 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 H0Y3Z8 333 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ITM2AO43736 263 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ZWINTO95229 277 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 EFNA1P20827 205 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 BMP5P22003 454 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 CHMP24386 653 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ABCE1P61221 599 aaKnown RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 PRR5P85299 388 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 SRYQ05066 204 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 STX5Q13190 355 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 MAD2L1Q13257 205 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 PTGR1Q14914 329 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 TNFAIP8L3Q5GJ75 292 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 CES4AQ5XG92 561 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ZCCHC12Q6PEW1 402 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 MED12LQ86YW9 2145 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 FADS6Q8N9I5 356 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 RELL2Q8NC24 303 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 OR2M3Q8NG83 312 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 MBD3L2Q8NHZ7 208 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 GIMAP5Q96F15 307 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 MCCC2Q9HCC0 563 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ATAD3AQ9NVI7 634 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ZNF629Q9UEG4 869 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 EIF3LQ9Y262 564 aaKnown RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 RPH3AQ9Y2J0 694 aaPredicted RBP19.26■□□□□ 0.67
HMGB3-205ENST00000455596 ACTL7BQ9Y614 415 aa19.26■□□□□ 0.67
HMGB3-205ENST00000455596 B4DXG7 233 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 ZIC3O60481 467 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 UTS2O95399 124 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 DHRS4L1P0CG22 281 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 ACP2P11117 423 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 TCEA1P23193 301 aaKnown RBP19.25■□□□□ 0.67
HMGB3-205ENST00000455596 PRIM2P49643 509 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 STARP49675 285 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 ZNF136P52737 540 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 GANABQ14697 944 aaKnown RBP19.25■□□□□ 0.67
HMGB3-205ENST00000455596 CPTPQ5TA50 214 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 NATD1Q8N6N6 113 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 LRRC46Q96FV0 321 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 PRPF18Q99633 342 aaKnown RBP19.25■□□□□ 0.67
HMGB3-205ENST00000455596 TUBA1CQ9BQE3 449 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 TBL1XR1Q9BZK7 514 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 RTN4RQ9BZR6 473 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 PTGES2Q9H7Z7 377 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 KCNK9Q9NPC2 374 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 MED11Q9P086 117 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 KCNN3Q9UGI6 736 aa19.25■□□□□ 0.67
HMGB3-205ENST00000455596 APCP25054 2843 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 SNUPNO95149 360 aaKnown RBP19.24■□□□□ 0.67
HMGB3-205ENST00000455596 IGKV1D-16P01601 117 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ALOX5P09917 674 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 LAMP1P11279 417 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 PRPS1L1P21108 318 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 LHX2P50458 406 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ASCL1P50553 236 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 GRAMD1BQ3KR37 738 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 MFSD12Q6NUT3 480 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 MARCH3Q86UD3 253 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ZNF781Q8N8C0 355 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 SLC16A11Q8NCK7 471 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 FBXO30Q8TB52 745 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 DUSP19Q8WTR2 217 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 FAM120BQ96EK7 910 aaKnown RBP19.24■□□□□ 0.67
HMGB3-205ENST00000455596 PGM2Q96G03 612 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ZNF559Q9BR84 538 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ZNF395Q9H8N7 513 aaPredicted RBP19.24■□□□□ 0.67
HMGB3-205ENST00000455596 SIRT3Q9NTG7 399 aaPredicted RBP19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ZCCHC3Q9NUD5 404 aaKnown RBP19.24■□□□□ 0.67
HMGB3-205ENST00000455596 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.24■□□□□ 0.67
HMGB3-205ENST00000455596 RAP2CQ9Y3L5 183 aa19.24■□□□□ 0.67
HMGB3-205ENST00000455596 ANGPTL1O95841 491 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 ZNF708P17019 499 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 HK1P19367 917 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 CAPN3P20807 821 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 CTSSP25774 331 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 SLC1A6P48664 564 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 DLX5P56178 289 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 EMX2Q04743 252 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 C17orf67Q0P5P2 114 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 PDCD2Q16342 344 aaPredicted RBP19.23■□□□□ 0.67
HMGB3-205ENST00000455596 DUSP5Q16690 384 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 SMU1Q2TAY7 513 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 LSM12Q3MHD2 195 aaKnown RBP19.23■□□□□ 0.67
HMGB3-205ENST00000455596 POMZP3Q6PJE2 187 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 KIRREL3Q8IZU9 778 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 C9orf106Q8NAJ2 232 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 OR5P2Q8WZ92 322 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 JADE3Q92613 823 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 ZBTB9Q96C00 473 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 COQ8BQ96D53 544 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 TM9SF2Q99805 663 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 YIPF4Q9BSR8 244 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 C20orf27Q9GZN8 174 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 NOP53Q9NZM5 478 aaKnown RBP19.23■□□□□ 0.67
HMGB3-205ENST00000455596 SNX8Q9Y5X2 465 aa19.23■□□□□ 0.67
HMGB3-205ENST00000455596 CREBBPQ92793 2442 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms