RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PERPQ96FX8 193 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 ZC3HAV1LQ96H79 300 aaKnown RBP11.98□□□□□ -0.49
HMGB3-204ENST00000448905 COX4I2Q96KJ9 171 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 ACPTQ9BZG2 426 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 CDC42EP4Q9H3Q1 356 aaKnown RBP11.98□□□□□ -0.49
HMGB3-204ENST00000448905 PLSCR4Q9NRQ2 329 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 DDX18Q9NVP1 670 aaKnown RBP11.98□□□□□ -0.49
HMGB3-204ENST00000448905 FAM120CQ9NX05 1096 aaKnown RBP11.98□□□□□ -0.49
HMGB3-204ENST00000448905 ZNF225Q9UK10 706 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 C19orf53Q9UNZ5 99 aaPredicted RBP11.98□□□□□ -0.49
HMGB3-204ENST00000448905 VPS13CQ709C8 3753 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 MPDZO75970 2070 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 NINQ8N4C6 2090 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 KIAA1549Q9HCM3 1950 aa11.98□□□□□ -0.49
HMGB3-204ENST00000448905 ABCA4P78363 2273 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 OR2M5A3KFT3 312 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 MYO1GB0I1T2 1018 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 H3BML4 177 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 TMCC2O75069 709 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 KCNH1O95259 989 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 CGAP01215 116 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 JUNP05412 331 aaKnown RBP11.97□□□□□ -0.49
HMGB3-204ENST00000448905 CHN1P15882 459 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 NTSP30990 170 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 NR1H2P55055 460 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 RAE1P78406 368 aaKnown RBP11.97□□□□□ -0.49
HMGB3-204ENST00000448905 LCP2Q13094 533 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 STX5Q13190 355 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 IMPG1Q17R60 797 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 EXOC3L2Q2M3D2 409 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 VPS26BQ4G0F5 336 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 BEX5Q5H9J7 111 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 PPP4R4Q6NUP7 873 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 TIFABQ6ZNK6 161 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 STK32CQ86UX6 486 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 WDR75Q8IWA0 830 aaKnown RBP11.97□□□□□ -0.49
HMGB3-204ENST00000448905 FAM76AQ8TAV0 307 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 FNDC9Q8TBE3 224 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 DCAKDQ8WVC6 231 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 C1GALT1C1Q96EU7 318 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 APIPQ96GX9 242 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 FMO2Q99518 471 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 CXorf56Q9H5V9 222 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 GLRX2Q9NS18 164 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 SIRT5Q9NXA8 310 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 TAS2R7Q9NYW3 318 aa11.97□□□□□ -0.49
HMGB3-204ENST00000448905 EXOC1LA0A1B0GW35 172 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 SERTM1A2A2V5 107 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 H3BQF6 201 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 DLX3O60479 287 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 NME6O75414 186 aaPredicted RBP11.96□□□□□ -0.49
HMGB3-204ENST00000448905 CRCPO75575 148 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 SYNGR4O95473 234 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 IL33O95760 270 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 SBK3P0C264 359 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 PCSK6P29122 969 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 RFX3P48380 749 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 SUCLG1P53597 346 aaKnown RBP11.96□□□□□ -0.49
HMGB3-204ENST00000448905 PRKAA2P54646 552 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 NAA20P61599 178 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 ZNF763Q0D2J5 394 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 TCHHL1Q5QJ38 904 aaPredicted RBP11.96□□□□□ -0.49
HMGB3-204ENST00000448905 PDSS1Q5T2R2 415 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 ANKRD34AQ69YU3 496 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 BEND4Q6ZU67 534 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 SH2D5Q6ZV89 423 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 MARCH3Q86UD3 253 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 LRRN4CLQ8ND94 238 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 OR5M1Q8NGP8 315 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 CDC26Q8NHZ8 85 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 TMEM171Q8WVE6 324 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 ELP4Q96EB1 424 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 CCDC126Q96EE4 140 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 GSX2Q9BZM3 304 aa11.96□□□□□ -0.49
HMGB3-204ENST00000448905 MCTS1Q9ULC4 181 aaKnown RBP11.96□□□□□ -0.49
HMGB3-204ENST00000448905 ANKHD1Q8IWZ3 2542 aaKnown RBP11.96□□□□□ -0.5
HMGB3-204ENST00000448905 A0A087WZY1 265 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 H0YC42 278 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 UPK1AO00322 258 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 URI1O94763 535 aaPredicted RBP11.95□□□□□ -0.5
HMGB3-204ENST00000448905 ANGPTL1O95841 491 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 HPGDP15428 266 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 IL11P20809 199 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 GABRA3P34903 492 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 EIF1AXP47813 144 aaKnown RBP11.95□□□□□ -0.5
HMGB3-204ENST00000448905 TPD52P55327 224 aaPredicted RBP11.95□□□□□ -0.5
HMGB3-204ENST00000448905 CLDN20P56880 219 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 GLE1Q53GS7 698 aaKnown RBP11.95□□□□□ -0.5
HMGB3-204ENST00000448905 TMEM107Q6UX40 140 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 ZNF550Q7Z398 422 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 OR2L13Q8N349 312 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 CIARTQ8N365 385 aaPredicted RBP11.95□□□□□ -0.5
HMGB3-204ENST00000448905 METTL25Q8N6Q8 603 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 MNS1Q8NEH6 495 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 OR6K3Q8NGY3 331 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 CEP70Q8NHQ1 597 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 GMPPAQ96IJ6 420 aaPredicted RBP11.95□□□□□ -0.5
HMGB3-204ENST00000448905 HDHD5Q9BXW7 423 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 EBPLQ9BY08 206 aa11.95□□□□□ -0.5
HMGB3-204ENST00000448905 RRAGDQ9NQL2 400 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms