RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 C16orf45Q96MC5 204 aaPredicted RBP2.69□□□□□ -1.98
VPS41-207ENST00000439468 FOXN4Q96NZ1 517 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 TMEM121Q9BTD3 319 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 WRAP53Q9BUR4 548 aaKnown RBP2.69□□□□□ -1.98
VPS41-207ENST00000439468 PNNQ9H307 717 aaKnown RBP2.69□□□□□ -1.98
VPS41-207ENST00000439468 RPAP3Q9H6T3 665 aaPredicted RBP2.69□□□□□ -1.98
VPS41-207ENST00000439468 CLEC5AQ9NY25 188 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 KLRF1Q9NZS2 232 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 RAI14Q9P0K7 980 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 ZNF581Q9P0T4 197 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 DUSP12Q9UNI6 340 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 ABCC8Q09428 1581 aa2.69□□□□□ -1.98
VPS41-207ENST00000439468 PRG4Q92954 1404 aaPredicted RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 A0A1B0GUL7 405 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 A0A1W2PQ72 361 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 FRG2CA6NGY1 282 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 ZSCAN5BA6NJL1 495 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 H3BTX0 84 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 GPRIN2O60269 458 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 RHBDL1O75783 438 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 GUCA1CO95843 209 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 SLC35E2P0CK97 266 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 UMPSP11172 480 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 LAMP1P11279 417 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 XRCC1P18887 633 aaPredicted RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 PTBP1P26599 531 aaKnown RBP eCLIP2.68□□□□□ -1.98
VPS41-207ENST00000439468 IL2RGP31785 369 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 STK19P49842 368 aaPredicted RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 ARHGDIBP52566 201 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 ERVPABLB-1P60509 514 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 TRA2BP62995 288 aaKnown RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 PAX2Q02962 417 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 IL18R1Q13478 541 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 CHI3L2Q15782 390 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 PPP1R3AQ16821 1122 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 ARL14Q8N4G2 192 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 CCDC110Q8TBZ0 833 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 AGAP11Q8TF27 550 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 GIPC3Q8TF64 312 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 TADA1Q96BN2 335 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 ZBED6CLQ96FA7 236 aaPredicted RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 DHTKD1Q96HY7 919 aaPredicted RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 HPDLQ96IR7 371 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 C1orf147Q96MC9 270 aaPredicted RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 VSTM2LQ96N03 204 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 TBC1D10AQ9BXI6 508 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 AMBNQ9NP70 447 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 TIGARQ9NQ88 270 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 CUTCQ9NTM9 273 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 AGPAT5Q9NUQ2 364 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 SLC2A6Q9UGQ3 507 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 CIDEBQ9UHD4 219 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 ATP6V1HQ9UI12 483 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 EXOSC1Q9Y3B2 195 aaKnown RBP2.68□□□□□ -1.98
VPS41-207ENST00000439468 PLB1Q6P1J6 1458 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 HCFC1P51610 2035 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 NHSL1Q5SYE7 1610 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 CUX1P39880 1505 aa2.68□□□□□ -1.98
VPS41-207ENST00000439468 A0A087WZY1 265 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 FBLL1A6NHQ2 334 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 FAM74A7A6NL05 159 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 LRRC30A6NM36 301 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 EFCAB7A8K855 629 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 G3V3Y1 287 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 PPIHO43447 177 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 EFNA2O43921 213 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 TSC22D2O75157 780 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 NOL4O94818 638 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 JCHAINP01591 159 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 IGFBP1P08833 259 aaPredicted RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 MDH1P40925 334 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 PTGER3P43115 390 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 OR1D4P47884 311 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 HSD17B7P56937 341 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 SCGB2A2Q13296 93 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 FAM74A3Q4VXF1 159 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 SEL1L3Q68CR1 1132 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 ZNF57Q68EA5 555 aaPredicted RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 CBWD2Q8IUF1 395 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 RHOXF1Q8NHV9 184 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 ELMO2Q96JJ3 720 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 APOL2Q9BQE5 337 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 THUMPD2Q9BTF0 503 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 TBCDQ9BTW9 1192 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 MRPL13Q9BYD1 178 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 RDH8Q9NYR8 311 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 CGNQ9P2M7 1197 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 RSPH14Q9UHP6 348 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 BARX2Q9UMQ3 279 aaPredicted RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 DHRS7Q9Y394 339 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 MFHAS1Q9Y4C4 1052 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 CFAP65Q6ZU64 1925 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 ZCCHC11Q5TAX3 1644 aaKnown RBP2.67□□□□□ -1.98
VPS41-207ENST00000439468 LRRC7Q96NW7 1537 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 NCOA1Q15788 1441 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 POGZQ7Z3K3 1410 aa2.67□□□□□ -1.98
VPS41-207ENST00000439468 LCMT2O60294 686 aaKnown RBP2.66□□□□□ -1.98
VPS41-207ENST00000439468 PRAMEF12O95522 483 aa2.66□□□□□ -1.98
VPS41-207ENST00000439468 SLC2A10O95528 541 aa2.66□□□□□ -1.98
VPS41-207ENST00000439468 THY1P04216 161 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms