RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 TMEM246Q9BRR3 403 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 PHPT1Q9NRX4 125 aaPredicted RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 CNIH4Q9P003 139 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 NDRG2Q9UN36 371 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 NOSIPQ9Y314 301 aaKnown RBP10.58□□□□□ -0.72
USP4-205ENST00000431357 KCNE3Q9Y6H6 103 aa10.58□□□□□ -0.72
USP4-205ENST00000431357 PTPRSQ13332 1948 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 TBC1D3BA6NDS4 549 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 GABRPO00591 440 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 KLF4O43474 513 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 PRICKLE3O43900 615 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 PCDH8O95206 1070 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 GNSP15586 552 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 IL12RB1P42701 662 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 RNF144AP50876 292 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 RGS8P57771 180 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 STXBP1P61764 594 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 DUSP2Q05923 314 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 MAP4K2Q12851 820 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 ZNF155Q12901 538 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 HMGN2P46Q86SG4 172 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 NRROSQ86YC3 692 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 MFSD9Q8NBP5 474 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 OR4Q3Q8NH05 313 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 NEIL3Q8TAT5 605 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 SP7Q8TDD2 431 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 ADAMTS15Q8TE58 950 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 DNAJA4Q8WW22 397 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 OTULINQ96BN8 352 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 SLC41A3Q96GZ6 507 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 QRSL1Q9H0R6 528 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 OSGEPL1Q9H4B0 414 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 XKR8Q9H6D3 395 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 IMP3Q9NV31 184 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 THAP10Q9P2Z0 257 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 CDH10Q9Y6N8 788 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 PRRC2BQ5JSZ5 2229 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 ZSCAN5BA6NJL1 495 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 A8MV72 311 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 ALPPL2P10696 532 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 APEX1P27695 318 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 ERP29P30040 261 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 CMPK1P30085 196 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 MC3RP41968 323 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 TAGLNQ01995 201 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 MLLT1Q03111 559 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 IL18Q14116 193 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 SF3A2Q15428 464 aaKnown RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 ZNF750Q32MQ0 723 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 CCDC58Q4VC31 144 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 TJAP1Q5JTD0 557 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 CLEC12AQ5QGZ9 265 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 C18orf63Q68DL7 685 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 HEPHL1Q6MZM0 1159 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 ZNF620Q6ZNG0 422 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 SHFQ7M4L6 423 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 GID4Q8IVV7 300 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 SAMD14Q8IZD0 417 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 OR2T33Q8NG76 320 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 OR4F15Q8NGB8 312 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 UBASH3BQ8TF42 649 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 ZNF681Q96N22 645 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 MCHR1Q99705 422 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 TMEM43Q9BTV4 400 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 TRAF4Q9BUZ4 470 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 MTHFD2LQ9H903 347 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 RANGRFQ9HD47 186 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 SLC6A20Q9NP91 592 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 C12orf4Q9NQ89 552 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 PAQR5Q9NXK6 330 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 TNFRSF10DQ9UBN6 386 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 GPR55Q9Y2T6 319 aaPredicted RBP10.57□□□□□ -0.72
USP4-205ENST00000431357 SPEF1Q9Y4P9 236 aa10.57□□□□□ -0.72
USP4-205ENST00000431357 C4orf51C9J302 202 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 SGK494L7N484 410 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 HPGDSO60760 199 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 LALBAP00709 142 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 CSF2P04141 144 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 C8orf89P0DMQ9 161 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 PRKCAP17252 672 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 NDUFV2P19404 249 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 CELP19835 753 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 TRHRP34981 398 aaPredicted RBP10.56□□□□□ -0.72
USP4-205ENST00000431357 DRD3P35462 400 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 ATP6V1E1P36543 226 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 AVPR1BP47901 424 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 INPP1P49441 399 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 ERVK-21P61565 698 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 PDGFRLQ15198 375 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 FAM214AQ32MH5 1076 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 SLC30A6Q6NXT4 461 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 ZNF322Q6U7Q0 402 aaPredicted RBP10.56□□□□□ -0.72
USP4-205ENST00000431357 GDF7Q7Z4P5 450 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 ZNF438Q7Z4V0 828 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 MEX3DQ86XN8 651 aaKnown RBP10.56□□□□□ -0.72
USP4-205ENST00000431357 NKAIN4Q8IVV8 208 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 SLC38A6Q8IZM9 456 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 ZFP41Q8N8Y5 198 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 OR2L3Q8NG85 312 aa10.56□□□□□ -0.72
USP4-205ENST00000431357 OR52E1Q8NGJ3 308 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms