RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PLOD3O60568 738 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 BCAS2O75934 225 aaPredicted RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 SUPT7LO94864 414 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 INHBAP08476 426 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 ANXA4P09525 319 aaPredicted RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 CD8BP10966 210 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 CASQ1P31415 396 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 EIF1AXP47813 144 aaKnown RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 RNF144AP50876 292 aaPredicted RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 NCBP2P52298 156 aaKnown RBP eCLIP7.26□□□□□ -1.25
VIM-202ENST00000421459 FOXA1P55317 472 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 C2orf80Q0P641 193 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 SGCBQ16585 318 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.26□□□□□ -1.25
VIM-202ENST00000421459 ZNF678Q5SXM1 525 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 C10orf62Q5T681 223 aaPredicted RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 MFSD12Q6NUT3 480 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 SYT10Q6XYQ8 523 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 ZNF704Q6ZNC4 412 aaPredicted RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 C20orf204Q6ZNR8 217 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 FAM214BQ7L5A3 538 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 ZAR1Q86SH2 424 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 FAM9CQ8IZT9 166 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 GATSQ8NAP1 163 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 LILRB1Q8NHL6 650 aaPredicted RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 METTL6Q8TCB7 284 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 PIK3R3Q92569 461 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 SLC9A6Q92581 669 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 NEUROG1Q92886 237 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 C1GALT1C1Q96EU7 318 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 TMEM237Q96Q45 408 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 BBS4Q96RK4 519 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 MRPL57Q9BQC6 102 aaKnown RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 C1QTNF3Q9BXJ4 246 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 MRPL46Q9H2W6 279 aaKnown RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 CDC42EP4Q9H3Q1 356 aaKnown RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 GLIPR2Q9H4G4 154 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 C12orf49Q9H741 205 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 PLSCR4Q9NRQ2 329 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 TAS2R9Q9NYW1 312 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 TMEM216Q9P0N5 145 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 SENP1Q9P0U3 644 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 VDAC3Q9Y277 283 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 ZNF175Q9Y473 711 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 SVEP1Q4LDE5 3571 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ESPNB1AK53 854 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 UBFD1O14562 309 aaKnown RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 TNFSF11O14788 317 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 CXCL13O43927 109 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 NDUFS7O75251 213 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ULK1O75385 1050 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 CRLF1O75462 422 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 UTS2O95399 124 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 IL33O95760 270 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ANGPTL1O95841 491 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 IL11P20809 199 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TIA1P31483 386 aaKnown RBP eCLIP7.25□□□□□ -1.25
VIM-202ENST00000421459 GABRA3P34903 492 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 MPIP34949 423 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 PHBP35232 272 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 PCYT1AP49585 367 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ATP5J2P56134 94 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 EEFSECP57772 596 aaKnown RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 ZNF844Q08AG5 666 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ACSM2AQ08AH3 577 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 CSTF3Q12996 717 aaKnown RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 HEPACAMQ14CZ8 416 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TMEM44Q2T9K0 475 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TSNAXIP1Q2TAA8 658 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 GRAMD1BQ3KR37 738 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 CYP27C1Q4G0S4 372 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 SPDYAQ5MJ70 313 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ACSM2BQ68CK6 577 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ANKRD26P1Q6NSI1 321 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 SH2D5Q6ZV89 423 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 GPRIN3Q6ZVF9 776 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ZNF619Q8N2I2 560 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 METTL25Q8N6Q8 603 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 OR10D3Q8NH80 312 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 FBXO30Q8TB52 745 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TMEM171Q8WVE6 324 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ROBO4Q8WZ75 1007 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 AKAP1Q92667 903 aaKnown RBP eCLIP7.25□□□□□ -1.25
VIM-202ENST00000421459 ERP27Q96DN0 273 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 C11orf24Q96F05 449 aaPredicted RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 OTUB1Q96FW1 271 aaPredicted RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 PRRG4Q9BZD6 226 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TMEM185BQ9H7F4 350 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TNFRSF12AQ9NP84 129 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 EQTNQ9NQ60 294 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 GIMAP4Q9NUV9 329 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 ZNF701Q9NV72 531 aaPredicted RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 FBXO34Q9NWN3 711 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 NMRK1Q9NWW6 199 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 TMCO1Q9UM00 188 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 C19orf53Q9UNZ5 99 aaPredicted RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 LAMP3Q9UQV4 416 aa7.25□□□□□ -1.25
VIM-202ENST00000421459 POLR3HQ9Y535 204 aaPredicted RBP7.25□□□□□ -1.25
VIM-202ENST00000421459 MED12LQ86YW9 2145 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 JMJD1CQ15652 2540 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms