RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ANKRD9Q96BM1 317 aaPredicted RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 SLC38A1Q9H2H9 487 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 C2orf42Q9NWW7 574 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 PTTG2Q9NZH5 202 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CNOT2Q9NZN8 540 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 MKL2Q9ULH7 1088 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CPSF4LA6NMK7 179 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 ACP2P11117 423 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 IMPDH2P12268 514 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 DRD5P21918 477 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ELAVL4P26378 380 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 PLCXD2Q0VAA5 305 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 FOXD4Q12950 439 aaPredicted RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 NCF4Q15080 339 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 TRMT12Q53H54 448 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 ULK3Q6PHR2 472 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CD300LDQ6UXZ3 194 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 KCTD8Q6ZWB6 473 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CLVS1Q8IUQ0 354 aaPredicted RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 SLC25A45Q8N413 288 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 C10orf53Q8N6V4 93 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 PLPP5Q8NEB5 264 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 COPS4Q9BT78 406 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 RBCK1Q9BYM8 510 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ENAMQ9NRM1 1142 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 SH3PXD2BA1X283 911 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 FRG2CA6NGY1 282 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ELOA3DA6NLF2 546 aaPredicted RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 RIIAD1A6NNX1 92 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ZNF99A8MXY4 864 aaPredicted RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 B4GAT1O43505 415 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 UBL4AP11441 157 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 PGCP20142 388 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 NOS3P29474 1203 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 SLC6A6P31641 620 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 PDX1P52945 283 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 IST1P53990 364 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CDK5R2Q13319 367 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 EXOSC7Q15024 291 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 NEDD8Q15843 81 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 DUSP7Q16829 419 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ZNF750Q32MQ0 723 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ELOA3BQ3SY89 546 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 NKAIN1Q4KMZ8 207 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 LCN1P1Q5VSP4 162 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CCDC81Q6ZN84 652 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 RBM44Q6ZP01 1051 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 GID4Q8IVV7 300 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ELOA3Q8NG57 546 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ADAMTS16Q8TE57 1224 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 NRTNQ99748 197 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 SLX1AQ9BQ83 275 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 SAP130Q9H0E3 1048 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 NDRG4Q9ULP0 352 aaKnown RBP7.81□□□□□ -1.16
USP54-203ENST00000418501 MAU2Q9Y6X3 613 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 UNC119BA6NIH7 251 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 SLC1A7O00341 560 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 TP53I11O14683 189 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 FOXS1O43638 330 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 CCNA2P20248 432 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 GTF2E2P29084 291 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 CCR4P51679 360 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 CD47Q08722 323 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 MAD2L1BPQ15013 274 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.8□□□□□ -1.16
USP54-203ENST00000418501 PEAR1Q5VY43 1037 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 RASSF6Q6ZTQ3 369 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 MBOAT2Q6ZWT7 520 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 PRSS48Q7RTY5 328 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 SLC34A3Q8N130 599 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 OR6C1Q96RD1 312 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 FAM117AQ9C073 453 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 UBAP1Q9NZ09 502 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 SPIN1Q9Y657 262 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 M0R3H8 397 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 EIF4E2O60573 245 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 CDC123O75794 336 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 SAGP10523 405 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 MPLP40238 635 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 HTR3AP46098 478 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 CLK1P49759 484 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 CCL7P80098 99 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 FUT7Q11130 342 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 EIF3IQ13347 325 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 DND1Q8IYX4 353 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 METTL27Q8N6F8 245 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 OR1L3Q8NH93 324 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 VMP1Q96GC9 406 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 SENP5Q96HI0 755 aaPredicted RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 PLCXD1Q9NUJ7 323 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 MRPS2Q9Y399 296 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 ATG2BQ96BY7 2078 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 EFCAB9A8MZ26 197 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 FAM227AF5H4B4 570 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 NUDT14O95848 222 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 FADS2O95864 444 aaKnown RBP7.8□□□□□ -1.16
USP54-203ENST00000418501 FPR3P25089 353 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 PSMB9P28065 219 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 SLC9A3P48764 834 aa7.8□□□□□ -1.16
USP54-203ENST00000418501 TMBIM6P55061 237 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms