RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TMEM99Q8N816 258 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 KIAA1143Q96AT1 154 aaPredicted RBP9.21□□□□□ -0.93
SS18-203ENST00000415083 ELP4Q96EB1 424 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 MS4A3Q96HJ5 214 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 CAMK1GQ96NX5 476 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 TEX101Q9BY14 249 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 TBC1D17Q9HA65 648 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 GALNT9Q9HCQ5 603 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 C20orf141Q9NUB4 165 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 FBXO34Q9NWN3 711 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 NLKQ9UBE8 527 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 ZMIZ1Q9ULJ6 1067 aa9.21□□□□□ -0.93
SS18-203ENST00000415083 PROM1O43490 865 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CLTBP09497 229 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CHRNB1P11230 501 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 HTR2AP28223 471 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 SSR2P43308 183 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 SNRPD2P62316 118 aaKnown RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 ACSM1Q08AH1 577 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 C1DQ13901 141 aaKnown RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 DEFB115Q30KQ5 88 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 DDI2Q5TDH0 399 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 SLC48A1Q6P1K1 146 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 ZNF620Q6ZNG0 422 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 Q8N402 240 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 RFLNBQ8N5W9 214 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 SLC16A11Q8NCK7 471 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 OR7G2Q8NG99 324 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 OR4M2Q8NGB6 313 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 GNPDA2Q8TDQ7 276 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 POF1BQ8WVV4 589 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 RASSF5Q8WWW0 418 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 TRIM63Q969Q1 353 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 OTUB2Q96DC9 234 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 FRMD6Q96NE9 622 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CRISPLD2Q9H0B8 497 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 ZNF223Q9UK11 482 aaPredicted RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 CDH10Q9Y6N8 788 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 TICRRQ7Z2Z1 1910 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 A0A0G2JPF8 293 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 EDDM13A0A1B0GTR0 161 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 HNRNPCL2B2RXH8 293 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 HNRNPCL3B7ZW38 293 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CPNE3O75131 537 aaKnown RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 HNRNPCL4P0DMR1 293 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 GAAP10253 952 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 DRD2P14416 443 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CELP19835 753 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 PKLRP30613 574 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 KHKP50053 298 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CLDN20P56880 219 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 OR10A3P58181 314 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 RAB8AP61006 207 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 UBE3AQ05086 875 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 KLHL22Q53GT1 634 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 ZNF311Q5JNZ3 666 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 HEPHL1Q6MZM0 1159 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 ZNF322Q6U7Q0 402 aaPredicted RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 NRMQ8IXM6 262 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 TCTE3Q8IZS6 198 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 OR8D1Q8WZ84 308 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 UFD1Q92890 307 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CCDC86Q9H6F5 360 aaKnown RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 TRIM45Q9H8W5 580 aaPredicted RBP9.21□□□□□ -0.94
SS18-203ENST00000415083 KCNK6Q9Y257 313 aa9.21□□□□□ -0.94
SS18-203ENST00000415083 CCDC182A6NF36 153 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 ERI3O43414 337 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 TIMP1P01033 207 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 MAKP20794 623 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 CPN2P22792 545 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 CDH11P55287 796 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 SMIM11AP58511 58 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 TRA2BP62995 288 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 HTRA3P83110 453 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 FHL1Q13642 323 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 DSG2Q14126 1118 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 NDUFA9Q16795 377 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 FAM78AQ5JUQ0 283 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 FAM209AQ5JX71 171 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 SMARCD3Q6STE5 483 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 MARCH9Q86YJ5 346 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 KLBQ86Z14 1044 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 KCT2Q8NC54 265 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 ARMC5Q96C12 935 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 RIPOR3Q96MK2 946 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 MARVELD1Q9BSK0 173 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 TRPV5Q9NQA5 729 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 RBFOX1Q9NWB1 397 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 SLCO1C1Q9NYB5 712 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 CASC3O15234 703 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 ZNF780AO75290 641 aaPredicted RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 EIF4EP06730 217 aaKnown RBP9.2□□□□□ -0.94
SS18-203ENST00000415083 AHRP35869 848 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 MAP2K3P46734 347 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 TAS2R41P59536 307 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 RUNX1T1Q06455 604 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 FAPQ12884 760 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 IRF4Q15306 451 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 PGGHGQ32M88 737 aa9.2□□□□□ -0.94
SS18-203ENST00000415083 SMUG1Q53HV7 270 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms