RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ADAMTS15Q8TE58 950 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 SLC22A18Q96BI1 424 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 HEATR5BQ9P2D3 2071 aa9.05□□□□□ -0.96
COL6A3-204ENST00000392003 PLRG1O43660 514 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 UPK1BO75841 260 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 LGI1O95970 557 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CHRM4P08173 479 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 IGFBP1P08833 259 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CCNYL3P0C7X3 344 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 NR2F6P10588 404 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CKMT1AP12532 417 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ALOX12P18054 663 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 MYL12AP19105 171 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 POU3F4P49335 361 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 DEFA1P59665 94 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 DEFA3P59666 94 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF91Q05481 1191 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 KRR1Q13601 381 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TBRG1Q3YBR2 411 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TMEM201Q5SNT2 666 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 PRAMEF8Q5VWM4 474 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 PRAMEF7Q5VXH5 474 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 C18orf63Q68DL7 685 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 MRM1Q6IN84 353 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 PLEKHM3Q6ZWE6 761 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 OLIG3Q7RTU3 272 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 HMGN2P46Q86SG4 172 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TRIM48Q8IWZ4 208 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 IL17RCQ8NAC3 791 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 OR6T1Q8NGN1 323 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ASB12Q8WXK4 309 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CNRIP1Q96F85 164 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 OPALINQ96PE5 141 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 POLR2J2Q9GZM3 115 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SRMSQ9H3Y6 488 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 KIR3DX1Q9H7L2 352 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SLC25A19Q9HC21 320 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 DDX28Q9NUL7 540 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SPHK1Q9NYA1 384 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 OR6C2Q9NZP2 312 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 LAMP5Q9UJQ1 280 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 IRGMA1A4Y4 181 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 DUXAA6NLW8 204 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 AP3D1O14617 1153 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ASNA1O43681 348 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 RASGRP1O95267 797 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SLC35G6P0C7Q6 338 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 F3P13726 295 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CD72P21854 359 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 GRK5P34947 590 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 RPL35P42766 123 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 KIR2DL1P43626 348 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 RPS15AP62244 130 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ACY1Q03154 408 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CDC20Q12834 499 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TRAM2Q15035 370 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 OCLNQ16625 522 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF750Q32MQ0 723 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 KLHL22Q53GT1 634 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TMEM31Q5JXX7 168 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF730Q6ZMV8 503 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CYP4Z2PQ8N1L4 340 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 IQCF1Q8N6M8 205 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SLC38A2Q96QD8 506 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TRAF4Q9BUZ4 470 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CNPPD1Q9BV87 410 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 MIR1-1HGQ9H1L0 117 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 FBRSQ9HAH7 460 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SEC14L4Q9UDX3 406 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SSR3Q9UNL2 185 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CAB39Q9Y376 341 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 PRSS38A1L453 326 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 PRAMEF27A3QJZ7 478 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 URADA6NGE7 173 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SFTPCP11686 197 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 HOXB1P14653 301 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 DRD1P21728 446 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 MMP11P24347 488 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TLX1P31314 330 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ACSL1P33121 698 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 MC3RP41968 323 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 GIPRP48546 466 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ADPRHP54922 357 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 PM20D2Q8IYS1 436 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 GNPDA2Q8TDQ7 276 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 COL26A1Q96A83 441 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 C16orf58Q96GQ5 468 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 OR7D2Q96RA2 312 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 TTYH2Q9BSA4 534 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 POLDIP3Q9BY77 421 aaKnown RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 FGF22Q9HCT0 170 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 ZC4H2Q9NQZ6 224 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 NDOR1Q9UHB4 597 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 CA5BQ9Y2D0 317 aa9.04□□□□□ -0.96
COL6A3-204ENST00000392003 KIF26AQ9ULI4 1882 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-204ENST00000392003 SYT5O00445 386 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 DLGAP3O95886 979 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 APOA1P02647 267 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 SCG5P05408 212 aa9.03□□□□□ -0.96
COL6A3-204ENST00000392003 ZNF250P15622 560 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms