RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 ISL1P61371 349 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 RPL6Q02878 288 aaKnown RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 BNIP3Q12983 259 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 EXOSC7Q15024 291 aaKnown RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 TCTE1Q5JU00 501 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CLEC12AQ5QGZ9 265 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 MLIPQ5VWP3 458 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 TSSK4Q6SA08 328 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 USP53Q70EK8 1073 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CLIP4Q8N3C7 705 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 SLC16A11Q8NCK7 471 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 ANGPTL6Q8NI99 470 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CAPSLQ8WWF8 208 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 DNAJA3Q96EY1 480 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CTRCQ99895 268 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 PSD2Q9BQI7 771 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 RSPO3Q9BXY4 272 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CHST8Q9H2A9 424 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 FAM60AQ9NP50 221 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF275Q9NSD4 429 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 SOHLH2Q9NX45 425 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 OR6C2Q9NZP2 312 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 HCN3Q9P1Z3 774 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CPSF4LA6NMK7 179 aaKnown RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 PCDHGA12O60330 932 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 GASTP01350 101 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 ACAA1P09110 424 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CSNK2A2P19784 350 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 CD247P20963 164 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 HNRNPFP52597 415 aaKnown RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 STXBP1P61764 594 aaKnown RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 TARDBPQ13148 414 aaKnown RBP eCLIP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF630Q2M218 657 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 TRMT12Q53H54 448 aaKnown RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 B3GNT8Q7Z7M8 397 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 VRK2Q86Y07 508 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 MINDY2Q8NBR6 621 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 NUP43Q8NFH3 380 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 OR4D11Q8NGI4 311 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 OR2A14Q96R47 310 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 UBE2ZQ9H832 354 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-201ENST00000379433 EVA1BQ9NVM1 165 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 MAU2Q9Y6X3 613 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 PI4KAP42356 2102 aa10.13□□□□□ -0.79
NEDD9-201ENST00000379433 A0A0A6YYD5 115 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 FUOMA2VDF0 154 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 H0YAE9 185 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 KPNA4O00629 521 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 MAN2B1O00754 1011 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 GNB5O14775 395 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 RDH16O75452 317 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ARAFP10398 606 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 NR2F6P10588 404 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ERGP11308 486 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 MPIP34949 423 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ITGA1P56199 1179 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 CHRNEQ04844 493 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 FADDQ13158 208 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 PRAMEF17Q5VTA0 474 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 FIGNL1Q6PIW4 674 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 CCDC71Q8IV32 467 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 AMER2Q8N7J2 671 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 OR9A4Q8NGU2 314 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 OPALINQ96PE5 141 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 RAB11FIP5Q9BXF6 653 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 DDX31Q9H8H2 851 aaKnown RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 NMNAT1Q9HAN9 279 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 NAALAD2Q9Y3Q0 740 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 AHCTF1Q8WYP5 2266 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 TAF4O00268 1085 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ADAMDEC1O15204 470 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 CNOT4O95628 575 aaKnown RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 CH25HO95992 272 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 LCKP06239 509 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ST6GAL1P15907 406 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 MAP4K2Q12851 820 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 LAIR2Q6ISS4 152 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 OOSP2Q86WS3 158 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 GPR32P1Q8NGA4 272 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ADAMTS15Q8TE58 950 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 GEMIN6Q8WXD5 167 aaKnown RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 PIK3R3Q92569 461 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 CRELD1Q96HD1 420 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 COX4I2Q96KJ9 171 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 HSPA12BQ96MM6 686 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 APOL4Q9BPW4 351 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 GPR83Q9NYM4 423 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 NDOR1Q9UHB4 597 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ASB4Q9Y574 426 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 SPTBN2O15020 2390 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 A0A0A6YYC8 382 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 GPR89AB7ZAQ6 455 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 I3L1I5 382 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 POLR1CO15160 346 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 MBTPS2O43462 519 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 JRKO75564 520 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 GPR89BP0CG08 455 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 MAGEA2P43356 314 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms