RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 C4orf47A7E2U8 309 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 MT-ND2P03891 347 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 SLC5A2P31639 672 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 TUBA1BP68363 451 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 GPR18Q14330 331 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 OR7A5Q15622 319 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 TUBA1AQ71U36 451 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 DEFB124Q8NES8 71 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 OR2T4Q8NH00 348 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 ZNF300Q96RE9 604 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-204ENST00000367248 TBC1D24Q9ULP9 559 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 IGHV3-20A0A0C4DH32 117 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 BLACEA4D250 179 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 FOXE1O00358 373 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-204ENST00000367248 FLRT2O43155 660 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 SCGB1D2O95969 90 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 DCDP81605 110 aaKnown RBP10.9□□□□□ -0.66
SYNE1-204ENST00000367248 EFR3AQ14156 821 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 PLCZ1Q86YW0 608 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 UEVLDQ8IX04 471 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 C19orf47Q8N9M1 422 aaKnown RBP10.9□□□□□ -0.66
SYNE1-204ENST00000367248 LYSMD1Q96S90 227 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 RIMS3Q9UJD0 308 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 NRAPQ86VF7 1730 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 OR2T1O43869 369 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 ORC5O43913 435 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 GKN3PP0CG01 181 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 TACR1P25103 407 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 CCR2P41597 374 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 RRADP55042 308 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 ARPC4P59998 168 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 SELENOWP63302 87 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 GRIP1Q9Y3R0 1128 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 RNF215Q9Y6U7 377 aa10.9□□□□□ -0.66
SYNE1-204ENST00000367248 MYH14Q7Z406 1995 aaKnown RBP10.9□□□□□ -0.66
SYNE1-204ENST00000367248 H0YJX3 145 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 CCNKO75909 580 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 EDN3P14138 238 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 MS4A2Q01362 244 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 OCLNQ16625 522 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 RAB11FIP2Q7L804 512 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 ADIPOR2Q86V24 386 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 LILRA3Q8N6C8 439 aaPredicted RBP10.9□□□□□ -0.67
SYNE1-204ENST00000367248 SIRT6Q8N6T7 355 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 ZNF740Q8NDX6 193 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 OR1E3Q8WZA6 343 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 MED28Q9H204 178 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 MBNL1Q9NR56 388 aaKnown RBP10.9□□□□□ -0.67
SYNE1-204ENST00000367248 TMEM9Q9P0T7 183 aa10.9□□□□□ -0.67
SYNE1-204ENST00000367248 A0A1W2PPW3 197 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 FRS3O43559 492 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 IST1P53990 364 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 VBP1P61758 197 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 HENMT1Q5T8I9 393 aaKnown RBP10.89□□□□□ -0.67
SYNE1-204ENST00000367248 ZADH2Q8N4Q0 377 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 OR4K13Q8NH42 304 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 NUDT22Q9BRQ3 303 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 SACM1LQ9NTJ5 587 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 PCDHA9Q9Y5H5 950 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 NDUFB2O95178 105 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 PCGF2P35227 344 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 SERPINA11Q86U17 422 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 AKAP14Q86UN6 197 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 OR51L1Q8NGJ5 315 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 OR5D16Q8NGK9 328 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 FBXO27Q8NI29 283 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 NPRL2Q8WTW4 380 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 DNAJA4Q8WW22 397 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-204ENST00000367248 HAVCR1Q96D42 359 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 FOXN4Q96NZ1 517 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 KLK10O43240 276 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 LCKP06239 509 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 TNFRSF1BP20333 461 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 GCH1P30793 250 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 SLC6A8P48029 635 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 ADPRHP54922 357 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 LHFPL3Q86UP9 236 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 TMEM17Q86X19 198 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 ACBD7Q8N6N7 88 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 CCDC120Q96HB5 630 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 C1GALT1Q9NS00 363 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 SMOXQ9NWM0 555 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 LSM1O15116 133 aaKnown RBP10.89□□□□□ -0.67
SYNE1-204ENST00000367248 JRKO75564 520 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 DCTP40126 519 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 POU4F2Q12837 409 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 DCST2Q5T1A1 773 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 ATAD3CQ5T2N8 411 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 CCNJQ5T5M9 372 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 OPN5Q6U736 354 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 KANSL1Q7Z3B3 1105 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 UBE2Q1Q7Z7E8 422 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 MEX3DQ86XN8 651 aaKnown RBP10.89□□□□□ -0.67
SYNE1-204ENST00000367248 PRR18Q8N4B5 295 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 ZNF565Q8N9K5 539 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 PIGUQ9H490 435 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 CLMPQ9H6B4 373 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 GJE1A6NN92 205 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 CCRL2O00421 344 aa10.89□□□□□ -0.67
SYNE1-204ENST00000367248 HMGB3O15347 200 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms