RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OR4Q3Q8NH05 313 aa20.34■□□□□ 0.85
SHMT1-202ENST00000352886 ASB15Q8WXK1 588 aa20.34■□□□□ 0.85
SHMT1-202ENST00000352886 MRGPRX1Q96LB2 322 aa20.34■□□□□ 0.85
SHMT1-202ENST00000352886 MN1Q10571 1320 aaPredicted RBP20.33■□□□□ 0.85
SHMT1-202ENST00000352886 KRR1Q13601 381 aaKnown RBP20.33■□□□□ 0.85
SHMT1-202ENST00000352886 GPR18Q14330 331 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 ARHGAP11BQ3KRB8 267 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 FIGLAQ6QHK4 219 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 ZNF836Q6ZNA1 936 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 GDPD3Q7L5L3 318 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 LSRQ86X29 649 aaPredicted RBP20.33■□□□□ 0.85
SHMT1-202ENST00000352886 LAX1Q8IWV1 398 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 OSTF1Q92882 214 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 CACYBPQ9HB71 228 aaKnown RBP20.33■□□□□ 0.85
SHMT1-202ENST00000352886 ACTR10Q9NZ32 417 aa20.33■□□□□ 0.85
SHMT1-202ENST00000352886 SPTBN5Q9NRC6 3674 aaKnown RBP20.33■□□□□ 0.85
SHMT1-202ENST00000352886 LOC105369274A0A096LPK9 316 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 LOC102723532A0A0G2JNH3 316 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 CENPVL1A0A0U1RR11 272 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 OR6C74A6NCV1 312 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 URADA6NGE7 173 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 TNFSF14O43557 240 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 APBB3O95704 486 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 CPMP14384 443 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 SOX18P35713 384 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 LARS2Q15031 903 aaKnown RBP20.33■□□□□ 0.84
SHMT1-202ENST00000352886 TRMT12Q53H54 448 aaKnown RBP20.33■□□□□ 0.84
SHMT1-202ENST00000352886 CCBE1Q6UXH8 406 aaPredicted RBP20.33■□□□□ 0.84
SHMT1-202ENST00000352886 TMEFF1Q8IYR6 380 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 OR4N4Q8N0Y3 316 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 MRPL38Q96DV4 380 aaKnown RBP20.33■□□□□ 0.84
SHMT1-202ENST00000352886 IL20RAQ9UHF4 553 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 SLC7A7Q9UM01 511 aa20.33■□□□□ 0.84
SHMT1-202ENST00000352886 SNPHO15079 494 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 LRRTM2O43300 516 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 OR5F1O95221 314 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 HNRNPA2B1P22626 353 aaKnown RBP20.32■□□□□ 0.84
SHMT1-202ENST00000352886 STAT5AP42229 794 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 CDH11P55287 796 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 TPTEP56180 551 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 PSPHP78330 225 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 GPR68Q15743 365 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 MBOAT2Q6ZWT7 520 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 SHISA5Q8N114 240 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 OR8H2Q8N162 312 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 SLC25A46Q96AG3 418 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 IL20Q9NYY1 176 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 PTGFRNQ9P2B2 879 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 EXOSC1Q9Y3B2 195 aaKnown RBP20.32■□□□□ 0.84
SHMT1-202ENST00000352886 SLC22A7Q9Y694 548 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 SURF4O15260 269 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 RPS25P62851 125 aaKnown RBP20.32■□□□□ 0.84
SHMT1-202ENST00000352886 TMPRSS11AQ6ZMR5 421 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 USP53Q70EK8 1073 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 SDF2Q99470 211 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 TOR4AQ9NXH8 423 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 PILRAQ9UKJ1 303 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 TRAPPC4Q9Y296 219 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 MRPS2Q9Y399 296 aaKnown RBP20.32■□□□□ 0.84
SHMT1-202ENST00000352886 V9GYH0 126 aa20.32■□□□□ 0.84
SHMT1-202ENST00000352886 IQCMA0A1B0GVH7 501 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 STK25O00506 426 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 KLF4O43474 513 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 IL1AP01583 271 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 EIF2S1P05198 315 aaKnown RBP20.31■□□□□ 0.84
SHMT1-202ENST00000352886 LIMS3P0CW19 117 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 LIMS4P0CW20 117 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 CD79BP40259 229 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 SRP54P61011 504 aaKnown RBP20.31■□□□□ 0.84
SHMT1-202ENST00000352886 TFF2Q03403 129 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 PLK5Q496M5 336 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF620Q6ZNG0 422 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 ABHD13Q7L211 337 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 TRIM48Q8IWZ4 208 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 GALNT12Q8IXK2 581 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 CAMKVQ8NCB2 501 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 C1GALT1C1Q96EU7 318 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 ADAP2Q9NPF8 381 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 LDB3O75112 727 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 CLEC2LP0C7M8 214 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 MSL3P1P0C860 447 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 HNRNPA0Q13151 305 aaKnown RBP20.31■□□□□ 0.84
SHMT1-202ENST00000352886 ALG11Q2TAA5 492 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF628Q5EBL2 1059 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 ZMAT1Q5H9K5 638 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 PRSS41Q7RTY9 318 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 LHFPL3Q86UP9 236 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 POGLUT1Q8NBL1 392 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 PATE1Q8WXA2 126 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 TXNDC15Q96J42 360 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 TEX12Q9BXU0 123 aa20.31■□□□□ 0.84
SHMT1-202ENST00000352886 SSX4O60224 188 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 APOA1P02647 267 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF10P21506 573 aaPredicted RBP20.3■□□□□ 0.84
SHMT1-202ENST00000352886 TMED10P49755 219 aaKnown RBP20.3■□□□□ 0.84
SHMT1-202ENST00000352886 DLX2Q07687 328 aaPredicted RBP20.3■□□□□ 0.84
SHMT1-202ENST00000352886 DUSP8Q13202 625 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 SELENBP1Q13228 472 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 TPBGQ13641 420 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 AADACL4Q5VUY2 407 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms