RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SNIP1Q8TAD8 396 aaKnown RBP18.23■□□□□ 0.51
USP48-201ENST00000308271 SGTBQ96EQ0 304 aa18.23■□□□□ 0.51
USP48-201ENST00000308271 SMG9Q9H0W8 520 aaKnown RBP18.23■□□□□ 0.51
USP48-201ENST00000308271 NAALAD2Q9Y3Q0 740 aa18.23■□□□□ 0.51
USP48-201ENST00000308271 CLEC2LP0C7M8 214 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 PET100P0DJ07 73 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 VSX2P58304 361 aaPredicted RBP18.22■□□□□ 0.51
USP48-201ENST00000308271 ZIC5Q96T25 663 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 MFFQ9GZY8 342 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 EMC7Q9NPA0 242 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 NUP205Q92621 2012 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 FOXE1O00358 373 aaPredicted RBP18.22■□□□□ 0.51
USP48-201ENST00000308271 TNFRSF10BO14763 440 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 S100A10P60903 97 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 TAGLNQ01995 201 aaKnown RBP18.22■□□□□ 0.51
USP48-201ENST00000308271 TSPAN31Q12999 210 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 LCTLQ6UWM7 567 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 PITX2Q99697 317 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 RXFP3Q9NSD7 469 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 TRDV1A0A1B0GX56 115 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 KRBOX1C9JBD0 128 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 GPX5O75715 221 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 PTH2RP49190 550 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 BTG1P62324 171 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 ID2Q02363 134 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 AMZ1Q400G9 498 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 OR5D16Q8NGK9 328 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 ZNF582Q96NG8 517 aaPredicted RBP18.22■□□□□ 0.51
USP48-201ENST00000308271 DPH1Q9BZG8 443 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 SPHK2Q9NRA0 654 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 CLEC2DQ9UHP7 191 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 PPT2Q9UMR5 302 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 CA12O43570 354 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 SLC22A5O76082 557 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 PRR35P0CG20 571 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 GABRA3P34903 492 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 RASGEF1BQ0VAM2 473 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 CHST14Q8NCH0 376 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 METTL21AQ8WXB1 218 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 DGAT2Q96PD7 388 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 P2RY12Q9H244 342 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 EDARQ9UNE0 448 aa18.22■□□□□ 0.51
USP48-201ENST00000308271 SCDO00767 359 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 SPDEFO95238 335 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 HMGN2P05204 90 aaKnown RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 CRHR2Q13324 411 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 PDGFRLQ15198 375 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 KCTD18Q6PI47 426 aaPredicted RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 WDR53Q7Z5U6 358 aaPredicted RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 KLHDC8AQ8IYD2 350 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 DEFB118Q96PH6 123 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 TREX2Q9BQ50 279 aaPredicted RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 MED17Q9NVC6 651 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 BTN1A1Q13410 526 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 NANOGP1Q8N7R0 232 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 OR2L2Q8NH16 312 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 BRIX1Q8TDN6 353 aaKnown RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 SLC38A5Q8WUX1 472 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 ZNF480Q8WV37 535 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 NEDD4LQ96PU5 975 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 NRAPQ86VF7 1730 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 TNRC6CQ9HCJ0 1690 aaKnown RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 MARF1Q9Y4F3 1742 aaKnown RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 MEN1O00255 615 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 PEX14O75381 377 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 MT-ND4P03905 459 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 SLC19A1P41440 591 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 ERVK-21P61565 698 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 TIGD3Q6B0B8 471 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 PNLDC1Q8NA58 520 aaKnown RBP18.21■□□□□ 0.51
USP48-201ENST00000308271 OR4K13Q8NH42 304 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 WDR20Q8TBZ3 569 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 ZDHHC1Q8WTX9 485 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 C1QTNF2Q9BXJ5 285 aa18.21■□□□□ 0.51
USP48-201ENST00000308271 GOSR2O14653 212 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 NUPL2O15504 423 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 FRS3O43559 492 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 NCR1O76036 304 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 FAHD1Q6P587 224 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 FOXRED2Q8IWF2 684 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 OR2AJ1Q8NGZ0 328 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 GIMAP1Q8WWP7 306 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 FCRL1Q96LA6 429 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ZNF559Q9BR84 538 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 AIFM2Q9BRQ8 373 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ALOXE3Q9BYJ1 711 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 METTL17Q9H7H0 456 aaPredicted RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 ZDHHC4Q9NPG8 344 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ANTXRLA6NF34 631 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 FZD7O75084 574 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 IGLV3-25P01717 112 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 RPL35P42766 123 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 MTNR1BP49286 362 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 OCLNQ16625 522 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 AFMIDQ63HM1 303 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 IFNL1Q8IU54 200 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 MFSD4AQ8N468 514 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 OR52I1Q8NGK6 324 aa18.2■□□□□ 0.5
USP48-201ENST00000308271 ISG20Q96AZ6 181 aaKnown RBP18.2■□□□□ 0.5
USP48-201ENST00000308271 KLF16Q9BXK1 252 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms