RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MAGEA12P43365 314 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 SERPINB9P50453 376 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 SUCLG1P53597 346 aaKnown RBP13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 CTBP2P56545 445 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 CLDN20P56880 219 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 ACSM2AQ08AH3 577 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNHIT3Q15649 155 aaPredicted RBP13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 EXOC3L2Q2M3D2 409 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 ACSM2BQ68CK6 577 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 ANKRD34AQ69YU3 496 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 HEPHL1Q6MZM0 1159 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 STK32CQ86UX6 486 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 ANKRA2Q9H9E1 313 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 GLRX2Q9NS18 164 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 ADAM21Q9UKJ8 722 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 MCTS1Q9ULC4 181 aaKnown RBP13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 PCNX3Q9H6A9 2034 aa13.27□□□□□ -0.29
CCDC88B-201ENST00000301897 CCDC151A5D8V7 595 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 TTC36A6NLP5 189 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 H0YC42 278 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 MANBAO00462 879 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 ULK1O75385 1050 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 THBDP07204 575 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 TPD52P55327 224 aaPredicted RBP13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 PSG6Q00889 435 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 DMTNQ08495 405 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 C17orf67Q0P5P2 114 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 STX5Q13190 355 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 STAC2Q6ZMT1 411 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 BEND4Q6ZU67 534 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 OR7G2Q8NG99 324 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 OR4N2Q8NGD1 307 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 DUSP19Q8WTR2 217 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 TRMT61AQ96FX7 289 aaKnown RBP13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 TMEM204Q9BSN7 226 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 GRPEL1Q9HAV7 217 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 C3orf14Q9HBI5 128 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 Q9N2J8 555 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 STK38LQ9Y2H1 464 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 NBEAL1Q6ZS30 2694 aa13.26□□□□□ -0.29
CCDC88B-201ENST00000301897 PRR14LQ5THK1 2151 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 A0A087WZY1 265 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 IGLV3-32A0A0A0MS00 114 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 A8MT66 165 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 SS18L1O75177 396 aaPredicted RBP13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 AQP8O94778 261 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 OR4F21O95013 312 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 IL33O95760 270 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 IFNA2P01563 188 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 TP53P04637 393 aaPredicted RBP13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF17P17021 662 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 TAC1P20366 129 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 HSD17B3P37058 310 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 CDH13P55290 713 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 RPS4XP62701 263 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 CLCQ05315 142 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 TNK1Q13470 666 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 SH2D4BQ5SQS7 431 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 GALNT18Q6P9A2 607 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 C22orf34Q6ZV56 151 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 RPS27LQ71UM5 84 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 CDYL2Q8N8U2 506 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 C16orf78Q8WTQ4 265 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 PLPPR2Q96GM1 343 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF382Q96SR6 550 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 HBEGFQ99075 208 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 TACO1Q9BSH4 297 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 TBL1XR1Q9BZK7 514 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF225Q9UK10 706 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 GRID1Q9ULK0 1009 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 C19orf53Q9UNZ5 99 aaPredicted RBP13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 GPR52Q9Y2T5 361 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 SNX8Q9Y5X2 465 aa13.25□□□□□ -0.29
CCDC88B-201ENST00000301897 C17orf51A8MQB3 221 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 PPP6CO00743 305 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 NME6O75414 186 aaPredicted RBP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 SOX30O94993 753 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 SYNGR4O95473 234 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 PSMB1P20618 241 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 DDCP20711 480 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 HMOX2P30519 316 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 NTSP30990 170 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 TIA1P31483 386 aaKnown RBP eCLIP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 IDUAP35475 653 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 EIF1AXP47813 144 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 RAE1P78406 368 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 TMEM44Q2T9K0 475 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 PDSS1Q5T2R2 415 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 GTF2IRD2BQ6EKJ0 949 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 PPP4R4Q6NUP7 873 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 ADAM5Q6NVV9 412 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 PODNL1Q6PEZ8 512 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 GTF2IRD2Q86UP8 949 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 EXOC3L1Q86VI1 746 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 WDR75Q8IWA0 830 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 METTL6Q8TCB7 284 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 HDHD5Q9BXW7 423 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 ACPTQ9BZG2 426 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 ACTR6Q9GZN1 396 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 TSPYL1Q9H0U9 437 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms