RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FAM27D1Q5T7N8 215 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SLC27A4Q6P1M0 643 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SMARCD3Q6STE5 483 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 DCUN1D3Q8IWE4 304 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 RDH10Q8IZV5 341 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TMEM145Q8NBT3 493 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TMEM163Q8TC26 289 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SETD7Q8WTS6 366 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 FGF13Q92913 245 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 RGMAQ96B86 450 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ISG20L2Q9H9L3 353 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 ACAD8Q9UKU7 415 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ATG4BQ9Y4P1 393 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 LRRK1Q38SD2 2015 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 A0A0G2JMP0 313 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 PRODHO43272 600 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ERI3O43414 337 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 FCMRO60667 390 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 YES1P07947 543 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ATF4P18848 351 aaPredicted RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 HTR2BP41595 481 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 INPP1P49441 399 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 CSTF1Q05048 431 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 ZNF311Q5JNZ3 666 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FAM78AQ5JUQ0 283 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 C9orf64Q5T6V5 341 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FAM46CQ5VWP2 391 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 OR4C11Q6IEV9 310 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 HSDL2Q6YN16 418 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 KIAA0907Q7Z7F0 614 aaPredicted RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 OR4Q3Q8NH05 313 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 NEIL3Q8TAT5 605 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SPRYD4Q8WW59 207 aaPredicted RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 UPRTQ96BW1 309 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FCRL4Q96PJ5 515 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TTTY10Q9BZA0 68 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SLC35C2Q9NQQ7 365 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 MCUBQ9NWR8 336 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 MAT2BQ9NZL9 334 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 KCNK6Q9Y257 313 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 GSTK1Q9Y2Q3 226 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 ARPC4-TTLL3A0A0A6YYG9 625 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 OR52A4PA6NMU1 304 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 LGI1O95970 557 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 ACP5P13686 325 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 MC3RP41968 323 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SLC1A3P43003 542 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SMIM11AP58511 58 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 WSCD2Q2TBF2 565 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 KLHL22Q53GT1 634 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 ZNF628Q5EBL2 1059 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 C1orf94Q6P1W5 598 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SLC36A4Q6YBV0 504 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 QSOX2Q6ZRP7 698 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 NRSN1Q8IZ57 195 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SHISA5Q8N114 240 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 CLDN22Q8N7P3 220 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 GDPD1Q8N9F7 314 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 OR51G2Q8NGK0 314 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 GIMAP5Q96F15 307 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 CNRIP1Q96F85 164 aaPredicted RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 CCDC120Q96HB5 630 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SECISBP2Q96T21 854 aaKnown RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 DDX31Q9H8H2 851 aaKnown RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 SYNPO2LQ9H987 977 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 NFKBIL1Q9UBC1 381 aaPredicted RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 TRPM6Q9BX84 2022 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SNRNP200O75643 2136 aaKnown RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 IGKV1-8A0A0C4DH67 115 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 A0A1W2PPC1 479 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 A0A1W2PPV9 198 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 IGLON5A6NGN9 336 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 GABRPO00591 440 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 LINC01565O15544 149 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 PLOD3O60568 738 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 UBXN7O94888 489 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 ADH1CP00326 375 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 MAPK9P45984 424 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SNRPNP63162 240 aaKnown RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 CSNK1G2P78368 415 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 BNC1Q01954 994 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 GNA13Q14344 377 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 IGSF11Q5DX21 431 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 C3orf38Q5JPI3 329 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 IDNKQ5T6J7 187 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 FCRLBQ6BAA4 426 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 FAM92BQ6ZTR7 304 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 NRMQ8IXM6 262 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 OR9A2Q8NGT5 310 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 DACT3Q96B18 629 aaPredicted RBP9.41□□□□□ -0.9
LIG3-201ENST00000262327 RSPRY1Q96DX4 576 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 PRRC1Q96M27 445 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 C12orf66Q96MD2 445 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 ATF6BQ99941 703 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 HDHD2Q9H0R4 259 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 S1PR5Q9H228 398 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 DPEP2Q9H4A9 486 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 SLC13A4Q9UKG4 626 aa9.41□□□□□ -0.9
LIG3-201ENST00000262327 CHD9Q3L8U1 2897 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms